Full description
This dataset originates from research carried out in 2016, published in the paper "Dynamic and rapid changes in the transcriptome and epigenome during germination and in developing rice (Oryza sativa) coleoptiles under anoxia and re-oxygenation." The RNA-seq data generated provides a detailed molecular profile of Oryza sativa enabling the identification of differentially expressed genes and uncovers the essential features for germination and early seedling growth under anoxic conditions.
The data provide insights into the molecular responses to oxygen deprivation. An extensive time course was examined, from dry seeds to germinating embryos (24 h) and up to 4-day-old rice coleoptiles, as well as coleoptiles collected from seedlings grown for 3 days under anoxic conditions and transferred to air for one day.
In rice, germination and seedling development can progress in both the presence and absence of oxygen. While the transcriptomic responses to anaerobic conditions, found using microarrays, have revealed common responses, even across kingdoms, these alone are not sufficient for altering tolerance to anaerobic conditions. An in-depth study was undertaken which resulted in data creation from several time points during germination and in the rice coleoptile using RNA-seq analyses.
Created: 2016
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Dynamic and rapid changes in the transcriptome and epigenome during germination and in developing rice (Oryza sativa) coleoptiles under anoxia and re-oxygenation
doi :
10.1111/tpj.13418
Article Citation: Narsai, R., Secco, D., Schultz, M. D., Ecker, J. R., Lister, R. and Whelan, J. (2017), Dynamic and rapid changes in the transcriptome and epigenome during germination and in developing rice (Oryza sativa) coleoptiles under anoxia and re-oxygenation. Plant J, 89: 805–824. doi:10.1111/tpj.13418
La Trobe University Genomics Platform
uri :
http://www.latrobe.edu.au/genomics
The La Trobe University Genomics Platform provides investigators with the latest in next-generation sequencing equipment and complementary bioinformatics assistance. We facilitate wide-ranging research projects requiring highly detailed global DNA and RNA sequence analysis. The Genomics Platform is part of the La Trobe Research Platforms and is available to investigators both internal and external to La Trobe University.
La Trobe University RNAseq Database
doi :
10.4225/22/592fa09c2f852
- DOI : 10.4225/22/5934B50C9C524
