Data

The compendium of crop Proteins with Annotated Locations (cropPAL) version 2020

The University of Western Australia
Hooper, Cornelia ; Castleden, Ian ; Aryamanesh, Nader ; Black, Kylie ; Grasso, Sally ; Millar, Harvey
Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]
ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.26182/5f3b83f9c3229&rft.title=The compendium of crop Proteins with Annotated Locations (cropPAL) version 2020&rft.identifier=10.26182/5f3b83f9c3229&rft.publisher=The University of Western Australia&rft.description=The compendium of crop Proteins with Annotated Locations (cropPAL) is a comprehensive collection of subcellular location annotation for crop proteins. Crops included are banana (musa acuminata), barley (hordeum vulgare), canola (brassica napus), field mustard (brassica rapa), maize (zea mays), potato (solanum tuberosum), rice (oryza sativa), sorghum (sorghum bicolor), soybean (glycine max), tomato (solanum lycopersicum), wheat (triticum aestivum) and wine grape (vitis vinifera). The location annotations are derived from published experimental localization studies and precompiled bioinformatic predictions. A protein-protein interaction list was compiled using homology linking of experimental Arabidopsis protein-protein interactions. A user-friendly search interface is provided on the http://crop-pal.org/ web server that allows filtering for species, location, methods, study parameters as well as allows to blast sequences to find localisations for the closest crop match.&rft.creator=Hooper, Cornelia &rft.creator=Castleden, Ian &rft.creator=Aryamanesh, Nader &rft.creator=Black, Kylie &rft.creator=Grasso, Sally &rft.creator=Millar, Harvey &rft.date=2020&rft.relation=http://research-repository.uwa.edu.au/en/publications/115eb189-e1b1-4e9c-8866-b41e6cc6a1d8&rft.relation=http://research-repository.uwa.edu.au/en/publications/acea5e13-0c6a-49ca-88ef-461fa6fd3be7&rft.relation=http://research-repository.uwa.edu.au/en/publications/0ee8f655-d228-4814-9594-06029305a2c5&rft_rights=&rft_subject=crop&rft_subject=subcellular location&rft_subject=proteomics&rft_subject=barley&rft_subject=hordeum vulgare&rft_subject=banana&rft_subject=musa acuminata&rft_subject=wheat&rft_subject=triticum aestivum&rft_subject=corn&rft_subject=maize&rft_subject=zea mays&rft_subject=rice&rft_subject=oryza sativa&rft_subject=GFP&rft_subject=protein location&rft_subject=fusion protein&rft_subject=fluorescent protein&rft_subject=brassica napus&rft_subject=canola&rft_subject=brassica rapa&rft_subject=field mustard&rft_subject=potato&rft_subject=solanum tuberosum&rft_subject=sorghum&rft_subject=sorghum bicolor&rft_subject=soybean&rft_subject=glycine max&rft_subject=tomato&rft_subject=solanum lycopersicum&rft_subject=grape&rft_subject=vitis vinifera&rft_subject=systems biology&rft_subject=molecular breeding&rft_subject=subcellulomes&rft_subject=organelles&rft_subject=compartment&rft_subject=plant cell&rft_subject=agriculture&rft_subject=metabolic modelling&rft.type=dataset&rft.language=English Access the data
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The compendium of crop Proteins with Annotated Locations (cropPAL) is a comprehensive collection of subcellular location annotation for crop proteins. Crops included are banana (musa acuminata), barley (hordeum vulgare), canola (brassica napus), field mustard (brassica rapa), maize (zea mays), potato (solanum tuberosum), rice (oryza sativa), sorghum (sorghum bicolor), soybean (glycine max), tomato (solanum lycopersicum), wheat (triticum aestivum) and wine grape (vitis vinifera). The location annotations are derived from published experimental localization studies and precompiled bioinformatic predictions. A protein-protein interaction list was compiled using homology linking of experimental Arabidopsis protein-protein interactions. A user-friendly search interface is provided on the http://crop-pal.org/ web server that allows filtering for species, location, methods, study parameters as well as allows to blast sequences to find localisations for the closest crop match.

Notes

External Organisations
Precision Medicine Theme, South Australian Health and Medical Research Institute; University of Adelaide
Associated Persons
Ian Castleden (Data Manager); Nader Aryamanesh (Data Collector); Sally Grasso (Data Collector)

Created: 2020-08 to 2020-08

Issued: 2020-01

Data time period: 1989 to 2019

This dataset is part of a larger collection

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Subjects
GFP | agriculture | banana | barley | brassica napus | brassica rapa | canola | compartment | corn | crop | field mustard | fluorescent protein | fusion protein | glycine max | grape | hordeum vulgare | maize | metabolic modelling | molecular breeding | musa acuminata | organelles | oryza sativa | plant cell | potato | protein location | proteomics | rice | solanum lycopersicum | solanum tuberosum | sorghum | sorghum bicolor | soybean | subcellular location | subcellulomes | systems biology | tomato | triticum aestivum | vitis vinifera | wheat | zea mays |

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Other Information
cropPAL2: Creating Ongoing, Mutually Beneficial Collaboration Between Biological Scientists and Librarians

url : http://research-repository.uwa.edu.au/en/publications/18953809-f3ba-42de-9944-ce5fa46374a3

Conference paper

Mutual benefit from library collaboration with computational biologists: the cropPAL project at the University of Western Australia

url : http://research-repository.uwa.edu.au/en/publications/4a5ca557-6957-49a6-b10c-a42a0d70790d

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