Data

The compendium of crop Proteins with Annotated Locations (cropPAL) version 2

The University of Western Australia
Hooper, Cornelia ; Millar, Andrew ; Castleden, Ian ; Aryamanesh, Nader ; Jacoby, Richard ; Grasso, Sally
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.26182/5b3ded60b7d2e&rft.title=The compendium of crop Proteins with Annotated Locations (cropPAL) version 2&rft.identifier=10.26182/5b3ded60b7d2e&rft.publisher=The University of Western Australia&rft.description=The compendium of crop Proteins with Annotated Locations (cropPAL) is a comprehensive collection of subcellular location annotation for crop proteins. Crops included are banana (musa acuminata), barley (hordeum vulgare), canola (brassica napus), maize (zea mays), potato (solanum tuberosum), rice (oryza sativa), sorghum (sorghum bicolor), soybean (glycine max), tomato (solanum lycopersicum), wheat (triticum aestivum) and wine grape (vitis vinifera). The location annotations are derived from published experimental localization studies and precompiled bioinformatic predictions. A protein-protein interaction list was compiled using homology linking of experimental Arabidopsis protein-protein interactions. A user-friendly search interface is provided on the http://crop-pal.org/ web server that allows filtering for species, location, methods, study parameters as well as allows to blast sequences to find localisations for the closest crop match.&rft.creator=Hooper, Cornelia &rft.creator=Millar, Andrew &rft.creator=Castleden, Ian &rft.creator=Aryamanesh, Nader &rft.creator=Jacoby, Richard &rft.creator=Grasso, Sally &rft.date=2017&rft.relation=http://research-repository.uwa.edu.au/en/publications/acea5e13-0c6a-49ca-88ef-461fa6fd3be7&rft.coverage=worldwide&rft_rights=&rft_subject=crop&rft_subject=subcellular location&rft_subject=proteomics&rft_subject=barley&rft_subject=banana&rft_subject=wheat&rft_subject=corn&rft_subject=maize&rft_subject=rice&rft_subject=GFP&rft_subject=protein location&rft_subject=fusion proteins&rft_subject=fluorescent protein&rft_subject=triticum aestivum&rft_subject=musa acuminata&rft_subject=hordeum vulgare&rft_subject=brassica napus&rft_subject=canola&rft_subject=zea mays&rft_subject=potato&rft_subject=solanum tuberosum&rft_subject=oryza sativa&rft_subject=sorghum&rft_subject=sorghum bicolor&rft_subject=soybean&rft_subject=glycine max&rft_subject=tomato&rft_subject=solanum lycopersicum&rft_subject=grape&rft_subject=vitis vinifera&rft.type=dataset&rft.language=English Access the data

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The compendium of crop Proteins with Annotated Locations (cropPAL) is a comprehensive collection of subcellular location annotation for crop proteins. Crops included are banana (musa acuminata), barley (hordeum vulgare), canola (brassica napus), maize (zea mays), potato (solanum tuberosum), rice (oryza sativa), sorghum (sorghum bicolor), soybean (glycine max), tomato (solanum lycopersicum), wheat (triticum aestivum) and wine grape (vitis vinifera). The location annotations are derived from published experimental localization studies and precompiled bioinformatic predictions. A protein-protein interaction list was compiled using homology linking of experimental Arabidopsis protein-protein interactions. A user-friendly search interface is provided on the http://crop-pal.org/ web server that allows filtering for species, location, methods, study parameters as well as allows to blast sequences to find localisations for the closest crop match.

Notes

Associated Persons
Ian Castleden (Creator); Nader Aryamanesh (Contributor); Richard Jacoby (Data Collector); Sally Grasso (Data Collector)

Created: 2016-10 to 2017-10

Issued: 2017-06-01

Data time period: 1989 to 2017

This dataset is part of a larger collection

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Other Information
Going to market with DeweyFish: the journey from partnership to commercialisation

url : http://research-repository.uwa.edu.au/en/publications/ced05202-8eb1-4382-bf26-5b2777312be2

Conference paper

cropPAL2: Creating Ongoing, Mutually Beneficial Collaboration Between Biological Scientists and Librarians

url : http://research-repository.uwa.edu.au/en/publications/18953809-f3ba-42de-9944-ce5fa46374a3

Conference paper

Mutual benefit from library collaboration with computational biologists: the cropPAL project at the University of Western Australia

url : http://research-repository.uwa.edu.au/en/publications/4a5ca557-6957-49a6-b10c-a42a0d70790d

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