Data

Transcriptome and SNP data for Pocillopora damicornis, Pocillopora acuta and Acropora millepora from the Great Barrier Reef

Australian Institute of Marine Science
Australian Institute of Marine Science (AIMS)
Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]
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The reefs sampled were: Wallace Islet, Five Reef, Night Island, Wilkie Reef, Tydeman Reef, Lizard Island, Emily Reef, Sudbury Reef (2 sites), Trunk Reef, Rib Reef, Dip Reef, Pelorus Island, Wheeler Reef, Darley Reef, Holbourne Island, Ross Reef, Boulton Reef, Goble Reef, Calder Island, Reef No. 20-344, Reef No. 21-121, High Peak Island, North Keppel Island, Miall Island, Outer Rocks and Child Reef. To try and identify loci that are under selection and are therefore for putative Quantitative Trait Loci.Maintenance and Update Frequency: notPlannedStatement: Statement: Methods as per Lundgren et al. 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While AIMS has made every reasonable effort to ensure high quality of the data, products and services, to the extent permitted by law the data, products and services are provided without any warranties of any kind, either expressed or implied, including without limitation any implied warranties of title, merchantability, and fitness for a particular purpose or non-infringement. AIMS make no representation or warranty that the data, products and services are accurate, complete, reliable or current. To the extent permitted by law, AIMS exclude all liability to any person arising directly or indirectly from the use of the data, products and services.&rft_rights=Attribution: Format for citation of metadata sourced from Australian Institute of Marine Science (AIMS) in a list of reference is as follows: Australian Institute of Marine Science (AIMS)(TBC). (2013). Transcriptome and SNP data for Pocillopora damicornis, Pocillopora acuta and Acropora millepora from the Great Barrier Reef. https://apps.aims.gov.au/metadata/view/b656b982-1758-4daa-9ebe-317c33e0834b, accessed[date-of-access].&rft_rights=Resource Usage:Security classification code: unclassifiedMetadata Usage:Access Constraint: intellectualPropertyRightsUse Constraint: intellectualPropertyRightsSecurity classification code: unclassified&rft_subject=oceans&rft.type=dataset&rft.language=English Access the data
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Licence & Rights:

Open Licence view details
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Creative Commons Attribution 3.0 Australia License
http://creativecommons.org/licenses/by/3.0/au/

Use Limitation: All AIMS data, products and services are provided "as is" and AIMS does not warrant their fitness for a particular purpose or non-infringement. While AIMS has made every reasonable effort to ensure high quality of the data, products and services, to the extent permitted by law the data, products and services are provided without any warranties of any kind, either expressed or implied, including without limitation any implied warranties of title, merchantability, and fitness for a particular purpose or non-infringement. AIMS make no representation or warranty that the data, products and services are accurate, complete, reliable or current. To the extent permitted by law, AIMS exclude all liability to any person arising directly or indirectly from the use of the data, products and services.

Attribution: Format for citation of metadata sourced from Australian Institute of Marine Science (AIMS) in a list of reference is as follows: "Australian Institute of Marine Science (AIMS)(TBC). (2013). Transcriptome and SNP data for Pocillopora damicornis, Pocillopora acuta and Acropora millepora from the Great Barrier Reef. https://apps.aims.gov.au/metadata/view/b656b982-1758-4daa-9ebe-317c33e0834b, accessed[date-of-access]".

Resource Usage:Security classification code: unclassifiedMetadata Usage:Access Constraint: intellectualPropertyRightsUse Constraint: intellectualPropertyRightsSecurity classification code: unclassified

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Full description

Transcriptome data of Pocillopora damicornis type beta (Pocillopora acuta), SNP data for loci that show significant G x E association Pocillopora damicornis, Pocillopora acuta and Acropora millepora.The Acropora millepora transcriptome of this study can be downloaded at:http://www.bio.utexas.edu/research/matz_lab/matzlab/Data.htmlSpecimens were collected from innershelf, midshelf and outershelf reefs in the far northern, northern, central and southern Great Barrier Reef. The reefs sampled were: Wallace Islet, Five Reef, Night Island, Wilkie Reef, Tydeman Reef, Lizard Island, Emily Reef, Sudbury Reef (2 sites), Trunk Reef, Rib Reef, Dip Reef, Pelorus Island, Wheeler Reef, Darley Reef, Holbourne Island, Ross Reef, Boulton Reef, Goble Reef, Calder Island, Reef No. 20-344, Reef No. 21-121, High Peak Island, North Keppel Island, Miall Island, Outer Rocks and Child Reef.
To try and identify loci that are under selection and are therefore for putative Quantitative Trait Loci.

Lineage

Maintenance and Update Frequency: notPlanned
Statement: Statement: Methods as per Lundgren et al. BMC Genetics 2013, 14:9http://www.biomedcentral.com/1471-2156/14/9

Notes

Credit
Lundgren, Petra, Dr (Co Investigator)
Credit
van Oppen, Madeleine, Dr (Co Investigator)

Modified: 18 09 2026

This dataset is part of a larger collection

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Subjects
oceans |

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Other Information
Map

url : https://data.aims.gov.au/mestmapkml/b656b982-1758-4daa-9ebe-317c33e0834b.kml

Link to Pocillopora damicornis, Pocillopora acuta and Acropora millepora SNP data (AIMS)

url : https://data.aims.gov.au/data-download/lundgren-genetics/Pdam-and-Pacuta-SNP-data.xlsx

Link to Pocillopora acuta transcriptome (AIMS) (51.7MB)

url : https://data.aims.gov.au/data-download/lundgren-genetics/Pdam-beta-contigs-ed-ed.fasta

Link to the Acropora millepora transcriptome

url : http://www.bio.utexas.edu/research/matz_lab/matzlab/Data.html

Identifiers
  • global : b656b982-1758-4daa-9ebe-317c33e0834b
ACN 633 798 857