Data

The coral Acropora loripes genome reveals an alternative pathway for cysteine biosynthesis in animals

Australian Institute of Marine Science
Australian Institute of Marine Science (AIMS)
Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]
ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=http://geo.aims.gov.au/geonetwork/geonetwork/srv/eng/search?uuid=c49b30cf-c95b-45aa-b4b9-9c66364fd546&rft.title=The coral Acropora loripes genome reveals an alternative pathway for cysteine biosynthesis in animals&rft.identifier=http://geo.aims.gov.au/geonetwork/geonetwork/srv/eng/search?uuid=c49b30cf-c95b-45aa-b4b9-9c66364fd546&rft.publisher=Australian Institute of Marine Science (AIMS)&rft.description=A. loripes samples were collected from Trunk Reef on the Great Barrier Reef. High–molecular weight DNA was extracted from frozen sperm and genomic DNA was recovered. Genome size and heterozygosity were estimated. RNA was extracted from a single nubbin, and quality was assessed. The genome of the coral Acropora loripes was assembled and explored for alternative cysteine biosynthesis pathways All sequencing data were deposited to NCBI and can be found under the BioProject accession PRJNA660608. Full methods of analysis are available in the paper Salzar et al (2022)Maintenance and Update Frequency: notPlanned&rft.creator=Australian Institute of Marine Science (AIMS) &rft.date=2024&rft.coverage=westlimit=146.8254089355469; southlimit=-18.32780321890083; eastlimit=146.8254089355469; northlimit=-18.32780321890083&rft.coverage=westlimit=146.8254089355469; southlimit=-18.32780321890083; eastlimit=146.8254089355469; northlimit=-18.32780321890083&rft_rights= http://creativecommons.org/licenses/by/3.0/au/&rft_rights=http://i.creativecommons.org/l/by/3.0/au/88x31.png&rft_rights=WWW:LINK-1.0-http--related&rft_rights=License Graphic&rft_rights=Creative Commons Attribution 3.0 Australia License&rft_rights=http://creativecommons.org/international/au/&rft_rights=WWW:LINK-1.0-http--related&rft_rights=WWW:LINK-1.0-http--related&rft_rights=License Text&rft_rights=Use Limitation: All AIMS data, products and services are provided as is and AIMS does not warrant their fitness for a particular purpose or non-infringement. While AIMS has made every reasonable effort to ensure high quality of the data, products and services, to the extent permitted by law the data, products and services are provided without any warranties of any kind, either expressed or implied, including without limitation any implied warranties of title, merchantability, and fitness for a particular purpose or non-infringement. AIMS make no representation or warranty that the data, products and services are accurate, complete, reliable or current. To the extent permitted by law, AIMS exclude all liability to any person arising directly or indirectly from the use of the data, products and services.&rft_rights=Attribution: Format for citation of metadata sourced from Australian Institute of Marine Science (AIMS) in a list of reference is as follows: Australian Institute of Marine Science (AIMS). (2022). The coral Acropora loripes genome reveals an alternative pathway for cysteine biosynthesis in animals. https://apps.aims.gov.au/metadata/view/c49b30cf-c95b-45aa-b4b9-9c66364fd546, accessed[date-of-access].&rft_rights=Creative Commons Attribution 3.0 Australia License http://creativecommons.org/licenses/by/3.0/au&rft_subject=oceans&rft.type=dataset&rft.language=English Access the data
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Use Limitation: All AIMS data, products and services are provided "as is" and AIMS does not warrant their fitness for a particular purpose or non-infringement. While AIMS has made every reasonable effort to ensure high quality of the data, products and services, to the extent permitted by law the data, products and services are provided without any warranties of any kind, either expressed or implied, including without limitation any implied warranties of title, merchantability, and fitness for a particular purpose or non-infringement. AIMS make no representation or warranty that the data, products and services are accurate, complete, reliable or current. To the extent permitted by law, AIMS exclude all liability to any person arising directly or indirectly from the use of the data, products and services.

Attribution: Format for citation of metadata sourced from Australian Institute of Marine Science (AIMS) in a list of reference is as follows: "Australian Institute of Marine Science (AIMS). (2022). The coral Acropora loripes genome reveals an alternative pathway for cysteine biosynthesis in animals. https://apps.aims.gov.au/metadata/view/c49b30cf-c95b-45aa-b4b9-9c66364fd546, accessed[date-of-access]".

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reception@aims.gov.au
adc@aims.gov.au

Brief description

A. loripes samples were collected from Trunk Reef on the Great Barrier Reef. High–molecular weight DNA was extracted from frozen sperm and genomic DNA was recovered. Genome size and heterozygosity were estimated. RNA was extracted from a single nubbin, and quality was assessed.


The genome of the coral Acropora loripes was assembled and explored for alternative cysteine biosynthesis pathways


All sequencing data were deposited to NCBI and can be found under the BioProject accession PRJNA660608. Full methods of analysis are available in the paper Salzar et al (2022)

Lineage

Maintenance and Update Frequency: notPlanned

Notes

Credit
Arun, P N. (KAUST)
Credit
Cui, G. (KAUST)
Credit
Bay, L K. Australian Institute of Marine Science (AIMS) and AIMS@JCU
Credit
van Oppen, (AIMS) and University of Melbourne
Credit
Webster, N. (AIMS), University of Queensland, Australian Antarctic Division
Credit
Aranda, M. (KAUST)
Credit
Salazar, A O. King Abdullah University of Science and Technology (KAUST)

Modified: 13 03 2024

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146.82541,-18.3278

146.82540893555,-18.327803218901

text: westlimit=146.8254089355469; southlimit=-18.32780321890083; eastlimit=146.8254089355469; northlimit=-18.32780321890083

Subjects
oceans |

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Other Information
Genome assembly and annotation can be found at reefgenomics.org

uri : http://reefgenomics.org/

Identifiers
  • global : c49b30cf-c95b-45aa-b4b9-9c66364fd546
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