Data

Simulated CSIRO Environmental Modelling Suite (EMS) output in netCDF format (out_simple.nc and out_simple1.nc)

Australian Institute of Marine Science
Australian Institute of Marine Science (AIMS)
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=https://apps.aims.gov.au/metadata/view/523873f4-79af-4ca6-9cc9-fc93e802c915&rft.title=Simulated CSIRO Environmental Modelling Suite (EMS) output in netCDF format (out_simple.nc and out_simple1.nc)&rft.identifier=https://apps.aims.gov.au/metadata/view/523873f4-79af-4ca6-9cc9-fc93e802c915&rft.publisher=Australian Institute of Marine Science (AIMS)&rft.description=The research is important for the Great Barrier Reef (GBR) water quality management. The data was collected for the parameterisation of the influence of tuft-shaped Trichodesmium colonies on the vertical movement of Trichodesmium in the GBR. Linux operating system, C compiler and NETCDF library were used to build the modified EMS applications on AIMS HPC. The EMS version used is 1.2.1. The modified EMS was derived from the eReefs model (https://ereefs.org.au/ereefs) and the model descriptions are found in Baird et al. (2020). Methods for collecting the data include the following:Hydrodynamic model forcing available in https://research.csiro.au/ereefs/models/models-about/models-hydrodynamics/;Biogeochemical (BGC) model forcing (Simulated hydrodynamic model output, regional wave model data, 2019 catchment conditions of nutrient and sediment loads available in https://svnserv.csiro.au/svn/CEM/projects/eReefs/model/gbr4_bgc_hindcast/gbr4_H2p0_B3p2_Cb/); Initialisation file: GBR4 BGC 3p1 initialisation data. The 4km resolution grid of the EMS was run on AIMS HPC from 1/12/2010 to 30/11/2012 and the data was collected on 26/06/2023. Software-specific information needed to interpret the data are R Software version 3.5.1, GNU Compiler Collection (GCC) version 6.1.0, network Common Data Form (NetCDF-cxx) version 4.2.1, Open Message Passing Interface (OpenMPI-gcc) version 1.10.2 and NetCDF Operators (NCO) version 4.5.5. R scripts for post-processing simulated data are available in Chinenyeani1986/Trichodesmium-buoyancy (github.com)Maintenance and Update Frequency: asNeeded&rft.creator=Australian Institute of Marine Science (AIMS) &rft.date=2026&rft.coverage=142.7052784624969,-10.764303307335927 142.61738655303998,-9.42356738833777 145.0344140631045,-7.860072656646314 146.30884675022938,-8.381951075458245 147.80300921099652,-10.41884713125028 150.43976649470326,-10.634802943132252 151.58236131764286,-14.833072754630697 154.74647005809092,-18.285361056436372 157.38322734179766,-22.606175434856755 157.51506520598298,-24.897906063261214 157.77874093435364,-27.265082858474443 153.42809141623755,-27.382170260098288 152.9007399594962,-25.414832868416557 150.0003069474188,-21.751904162573116 148.41825257719475,-19.863006528481616 146.22095484077252,-18.785180764492054 146.04517102185872,-17.029565475308054 145.21019788201826,-16.187619027316458 145.385981700932,-14.790601978393827 144.4631166516347,-14.237733251630013 143.75998137597955,-14.280310407733785 142.70690893885185,-10.752380575221725 142.7052784624969,-10.764303307335927 142.70690893885185,-10.752380575221725 143.75998137597955,-14.280310407733785 144.4631166516347,-14.237733251630013 145.385981700932,-14.790601978393827 145.21019788201826,-16.187619027316458 146.04517102185872,-17.029565475308054 146.22095484077252,-18.785180764492054 148.41825257719475,-19.863006528481616 150.0003069474188,-21.751904162573116 152.9007399594962,-25.414832868416557 153.42809141623755,-27.382170260098288 157.77874093435364,-27.265082858474443 157.51506520598298,-24.897906063261214 157.38322734179766,-22.606175434856755 154.74647005809092,-18.285361056436372 151.58236131764286,-14.833072754630697 150.43976649470326,-10.634802943132252 147.80300921099652,-10.41884713125028 146.30884675022938,-8.381951075458245 145.0344140631045,-7.860072656646314 142.61738655303998,-9.42356738833777 142.7052784624969,-10.764303307335927&rft_rights=Creative Commons Attribution-NonCommercial 3.0 Australia License http://creativecommons.org/licenses/by-nc/3.0/au/&rft_rights=Use Limitation: All AIMS data, products and services are provided as is and AIMS does not warrant their fitness for a particular purpose or non-infringement. While AIMS has made every reasonable effort to ensure high quality of the data, products and services, to the extent permitted by law the data, products and services are provided without any warranties of any kind, either expressed or implied, including without limitation any implied warranties of title, merchantability, and fitness for a particular purpose or non-infringement. AIMS make no representation or warranty that the data, products and services are accurate, complete, reliable or current. To the extent permitted by law, AIMS exclude all liability to any person arising directly or indirectly from the use of the data, products and services.&rft_rights=Attribution: Format for citation of metadata sourced from Australian Institute of Marine Science (AIMS) in a list of reference is as follows: Australian Institute of Marine Science (AIMS). (2024). Simulated CSIRO Environmental Modelling Suite (EMS) output in netCDF format (out_simple.nc and out_simple1.nc). https://apps.aims.gov.au/metadata/view/523873f4-79af-4ca6-9cc9-fc93e802c915, accessed[date-of-access].&rft_subject=oceans&rft.type=dataset&rft.language=English Access the data
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Creative Commons Attribution-NonCommercial 3.0 Australia License
http://creativecommons.org/licenses/by-nc/3.0/au/

Use Limitation: All AIMS data, products and services are provided "as is" and AIMS does not warrant their fitness for a particular purpose or non-infringement. While AIMS has made every reasonable effort to ensure high quality of the data, products and services, to the extent permitted by law the data, products and services are provided without any warranties of any kind, either expressed or implied, including without limitation any implied warranties of title, merchantability, and fitness for a particular purpose or non-infringement. AIMS make no representation or warranty that the data, products and services are accurate, complete, reliable or current. To the extent permitted by law, AIMS exclude all liability to any person arising directly or indirectly from the use of the data, products and services.

Attribution: Format for citation of metadata sourced from Australian Institute of Marine Science (AIMS) in a list of reference is as follows: "Australian Institute of Marine Science (AIMS). (2024). Simulated CSIRO Environmental Modelling Suite (EMS) output in netCDF format (out_simple.nc and out_simple1.nc). https://apps.aims.gov.au/metadata/view/523873f4-79af-4ca6-9cc9-fc93e802c915, accessed[date-of-access]".

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The research is important for the Great Barrier Reef (GBR) water quality management. The data was collected for the parameterisation of the influence of tuft-shaped Trichodesmium colonies on the vertical movement of Trichodesmium in the GBR. Linux operating system, C compiler and NETCDF library were used to build the modified EMS applications on AIMS HPC. The EMS version used is 1.2.1. The modified EMS was derived from the eReefs model (https://ereefs.org.au/ereefs) and the model descriptions are found in Baird et al. (2020). Methods for collecting the data include the following:


Hydrodynamic model forcing available in https://research.csiro.au/ereefs/models/models-about/models-hydrodynamics/;


Biogeochemical (BGC) model forcing (Simulated hydrodynamic model output, regional wave model data, 2019 catchment conditions of nutrient and sediment loads available in https://svnserv.csiro.au/svn/CEM/projects/eReefs/model/gbr4_bgc_hindcast/gbr4_H2p0_B3p2_Cb/); Initialisation file: GBR4 BGC 3p1 initialisation data.


The 4km resolution grid of the EMS was run on AIMS HPC from 1/12/2010 to 30/11/2012 and the data was collected on 26/06/2023. Software-specific information needed to interpret the data are R Software version 3.5.1, GNU Compiler Collection (GCC) version 6.1.0, network Common Data Form (NetCDF-cxx) version 4.2.1, Open Message Passing Interface (OpenMPI-gcc) version 1.10.2 and NetCDF Operators (NCO) version 4.5.5. R scripts for post-processing simulated data are available in Chinenyeani1986/Trichodesmium-buoyancy (github.com)

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Maintenance and Update Frequency: asNeeded

Notes

Credit
Ani, C. J., James Cook University (JCU) and Australian Institute of Marine Science (AIMS)
Credit
Funding body: AIMS@JCU PhD Scholarship; Queensland Water Modelling Network

Modified: 18 09 2026

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150.1980637437,-17.621121458372

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oceans |

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Other Information
GitHub Repository for Trichodesmium-buoyancy

url : https://github.com/Chinenyeani1986/Trichodesmium-buoyancy

Ani, C. J., Baird, M., & Robson, B. (2024). Modelling buoyancy-driven vertical movement of Trichodesmium application in the Great Barrier Reef. Ecological Modelling, 487, 110567. https://doi.org/10.1016/j.ecolmodel.2023.110567

doi : https://doi.org/10.1016/j.ecolmodel.2023.110567

Identifiers
  • global : 523873f4-79af-4ca6-9cc9-fc93e802c915
ACN 633 798 857