Data

Simulated CSIRO Environmental Modelling Suite (EMS) output in netCDF format (out_simple.nc)

Australian Institute of Marine Science
Australian Institute of Marine Science (AIMS)
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=https://apps.aims.gov.au/metadata/view/7b58348d-3d68-43db-9444-d5d94553f952&rft.title=Simulated CSIRO Environmental Modelling Suite (EMS) output in netCDF format (out_simple.nc)&rft.identifier=https://apps.aims.gov.au/metadata/view/7b58348d-3d68-43db-9444-d5d94553f952&rft.publisher=Australian Institute of Marine Science (AIMS)&rft.description=The research is important for the Great Barrier Reef (GBR) water quality management. The data was collected for the quantification of the contribution of Trichodesmium to the nitrogen budget of the GBR. Linux operating system, C compiler and NETCDF library were used to build the modified EMS applications on AIMS HPC. The EMS version used is 1.2.1. The modified EMS was derived from the eReefs model (https://ereefs.org.au/ereefs) and the model descriptions are found in Baird et al. (2020). Methods for collecting the data include the following: Hydrodynamic model forcing available in https://research.csiro.au/ereefs/models/models-about/models-hydrodynamics/; Biogeochemical (BGC) model forcing (Simulated hydrodynamic model output, regional wave model data, 2019 catchment conditions of nutrient and sediment loads available in https://svnserv.csiro.au/svn/CEM/projects/eReefs/model/gbr4_bgc_hindcast/gbr4_H2p0_B3p2_Cb/); Initialisation file: GBR4 BGC 3p1 initialisation data. The 4km resolution grid of the EMS was run on AIMS HPC from 1/12/2010 to 30/11/2012 and the data was collected on 17/02/2022. Software-specific information needed to interpret the data are R Software version 3.5.1, GNU Compiler Collection (GCC) version 6.1.0, network Common Data Form (NetCDF-cxx) version 4.2.1, Open Message Passing Interface (OpenMPI-gcc) version 1.10.2 and NetCDF Operators (NCO) version 4.5.5. R scripts for post-processing simulated data are available in https://github.com/Chinenyeani1986/Trichodesmium-N-budget.Maintenance and Update Frequency: asNeeded&rft.creator=Australian Institute of Marine Science (AIMS) &rft.date=2024&rft.coverage=152.78320401906967,-21.05164806863435 150.08422851562503,-19.207323293226786 147.79907226562503,-17.570457098263176 146.4111337065697,-16.663814616112766 145.59082031250003,-13.75241725690092 144.14795011281967,-11.312239220321954 143.9721688628197,-10.081086780692429 142.23632901906967,-10.124368266020399 142.89550870656967,-11.743001512210943 143.64257901906967,-12.473742406771647 143.44482511281967,-13.65142185715988 143.84399414062503,-14.47193698671746 144.49768066406253,-14.205735854613414 145.2685555815697,-14.950714010354217 145.40039151906967,-16.28439011888136 146.08154386281967,-17.31549991421269 146.05957120656967,-18.528539160505183 146.60888761281967,-19.297939505483495 148.8281258940697,-20.187575319964242 148.6303719878197,-20.702495651071466 149.75097745656967,-22.318022679759075 150.32226651906967,-22.541527295179396 151.77062988281253,-24.096105911127847 154.40185546875003,-24.046496564719828 152.78320401906967,-21.05164806863435&rft_rights=Creative Commons Attribution-NonCommercial 3.0 Australia License http://creativecommons.org/licenses/by-nc/3.0/au/&rft_rights=Use Limitation: All AIMS data, products and services are provided as is and AIMS does not warrant their fitness for a particular purpose or non-infringement. While AIMS has made every reasonable effort to ensure high quality of the data, products and services, to the extent permitted by law the data, products and services are provided without any warranties of any kind, either expressed or implied, including without limitation any implied warranties of title, merchantability, and fitness for a particular purpose or non-infringement. AIMS make no representation or warranty that the data, products and services are accurate, complete, reliable or current. To the extent permitted by law, AIMS exclude all liability to any person arising directly or indirectly from the use of the data, products and services.&rft_rights=Attribution: Format for citation of metadata sourced from Australian Institute of Marine Science (AIMS) in a list of reference is as follows: Australian Institute of Marine Science (AIMS). (2022). Simulated CSIRO Environmental Modelling Suite (EMS) output in netCDF format (out_simple.nc). https://apps.aims.gov.au/metadata/view/7b58348d-3d68-43db-9444-d5d94553f952, accessed[date-of-access].&rft_subject=oceans&rft.type=dataset&rft.language=English Access the data
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Creative Commons Attribution-NonCommercial 3.0 Australia License
http://creativecommons.org/licenses/by-nc/3.0/au/

Use Limitation: All AIMS data, products and services are provided "as is" and AIMS does not warrant their fitness for a particular purpose or non-infringement. While AIMS has made every reasonable effort to ensure high quality of the data, products and services, to the extent permitted by law the data, products and services are provided without any warranties of any kind, either expressed or implied, including without limitation any implied warranties of title, merchantability, and fitness for a particular purpose or non-infringement. AIMS make no representation or warranty that the data, products and services are accurate, complete, reliable or current. To the extent permitted by law, AIMS exclude all liability to any person arising directly or indirectly from the use of the data, products and services.

Attribution: Format for citation of metadata sourced from Australian Institute of Marine Science (AIMS) in a list of reference is as follows: "Australian Institute of Marine Science (AIMS). (2022). Simulated CSIRO Environmental Modelling Suite (EMS) output in netCDF format (out_simple.nc). https://apps.aims.gov.au/metadata/view/7b58348d-3d68-43db-9444-d5d94553f952, accessed[date-of-access]".

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Brief description

The research is important for the Great Barrier Reef (GBR) water quality management. The data was collected for the quantification of the contribution of Trichodesmium to the nitrogen budget of the GBR. Linux operating system, C compiler and NETCDF library were used to build the modified EMS applications on AIMS HPC. The EMS version used is 1.2.1. The modified EMS was derived from the eReefs model (https://ereefs.org.au/ereefs) and the model descriptions are found in Baird et al. (2020). Methods for collecting the data include the following: Hydrodynamic model forcing available in https://research.csiro.au/ereefs/models/models-about/models-hydrodynamics/; Biogeochemical (BGC) model forcing (Simulated hydrodynamic model output, regional wave model data, 2019 catchment conditions of nutrient and sediment loads available in https://svnserv.csiro.au/svn/CEM/projects/eReefs/model/gbr4_bgc_hindcast/gbr4_H2p0_B3p2_Cb/); Initialisation file: GBR4 BGC 3p1 initialisation data. The 4km resolution grid of the EMS was run on AIMS HPC from 1/12/2010 to 30/11/2012 and the data was collected on 17/02/2022. Software-specific information needed to interpret the data are R Software version 3.5.1, GNU Compiler Collection (GCC) version 6.1.0, network Common Data Form (NetCDF-cxx) version 4.2.1, Open Message Passing Interface (OpenMPI-gcc) version 1.10.2 and NetCDF Operators (NCO) version 4.5.5. R scripts for post-processing simulated data are available in https://github.com/Chinenyeani1986/Trichodesmium-N-budget.

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Maintenance and Update Frequency: asNeeded

Notes

Credit
Ani, CJ. James Cook University (JCU) and AIMS
Credit
Robson, B. Australian Institute of Marine Science (AIMS)
Credit
Funding body: AIMS@JCU PhD Scholarship; Queensland Water Modelling Network

Modified: 17 10 2024

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148.31909224391,-17.08859634591

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Other Information
Ani, C. J., Smithers, S. G., Lewis, S., Baird, M., & Robson, B. (2023). eReefs modelling suggests Trichodesmium may be a major nitrogen source in the Great Barrier Reef. Estuarine, Coastal and Shelf Science, 285, 108306. https://doi.org/10.1016/j.ecss.2023.108306

doi : https://doi.org/10.1016/j.ecss.2023.108306

GitHub Repository: Trichodesmium-N-budget.

uri : https://github.com/Chinenyeani1986/Trichodesmium-N-budget.

Identifiers
  • global : 7b58348d-3d68-43db-9444-d5d94553f952