Data

Short-read next generation DNA sequencing of Black swan AKBS03

The University of Queensland
Associate Professor Kirsty Short (Aggregated by) Associate Professor Kirsty Short (Aggregated by) Dr Tim Bruxner (Aggregated by) Dr Tim Bruxner (Aggregated by) Mr Anjana Chamal Karawita (Aggregated by)
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.48610/f6ba161&rft.title=Short-read next generation DNA sequencing of Black swan AKBS03&rft.identifier=RDM ID: 23625e90-5a56-11ed-a0f4-17fb60694883&rft.publisher=The University of Queensland&rft.description=The relative geographic isolation of the Australian black swan (Cygnus atratus) may have resulted in a limited immune repertoire and increased susceptibility to infectious diseases, notably infectious diseases from which Australia has been largely shielded. Unlike mallard ducks and the mute swan (Cygnus olor), the black swan is extremely sensitive to highly pathogenic avian influenza. Understanding this susceptibility has been impaired by the absence of any available swan genome and transcriptome information.Here, we generate the first chromosome-length black and mute swan genomes annotated with transcriptome data, all using long-read based pipelines generated for vertebrate species.&rft.creator=Associate Professor Kirsty Short&rft.creator=Associate Professor Kirsty Short&rft.creator=Dr Tim Bruxner&rft.creator=Dr Tim Bruxner&rft.creator=Mr Anjana Chamal Karawita&rft.creator=Mr Anjana Chamal Karawita&rft.creator=Mr Anjana Karawita&rft.date=2022&rft_rights=2022, The University of Queensland&rft_rights= https://guides.library.uq.edu.au/deposit-your-data/license-reuse-data-agreement&rft_subject=eng&rft_subject=Veterinary pathology&rft_subject=Veterinary sciences&rft_subject=AGRICULTURAL, VETERINARY AND FOOD SCIENCES&rft_subject=Veterinary virology&rft_subject=Genomics and transcriptomics&rft_subject=Bioinformatics and computational biology&rft_subject=BIOLOGICAL SCIENCES&rft_subject=Genomics&rft_subject=Genetics&rft_subject=Virology&rft_subject=Microbiology&rft.type=dataset&rft.language=English Access the data
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s4381080@student.uq.edu.au
School of Chemistry and Molecular Biosciences

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The relative geographic isolation of the Australian black swan (Cygnus atratus) may have resulted in a limited immune repertoire and increased susceptibility to infectious diseases, notably infectious diseases from which Australia has been largely shielded. Unlike mallard ducks and the mute swan (Cygnus olor), the black swan is extremely sensitive to highly pathogenic avian influenza. Understanding this susceptibility has been impaired by the absence of any available swan genome and transcriptome information.Here, we generate the first chromosome-length black and mute swan genomes annotated with transcriptome data, all using long-read based pipelines generated for vertebrate species.

Issued: 2022

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Subjects
Agricultural, Veterinary and Food Sciences | Biological Sciences | Bioinformatics and Computational Biology | Genetics | Genomics | Genomics and Transcriptomics | Microbiology | Veterinary Pathology | Veterinary Sciences | Veterinary Virology | Virology | eng |

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The swan genome and transcriptome, it is not all black and white

local : UQ:d652fb4

Karawita, Anjana C., Cheng, Yuanyuan, Chew, Keng Yih, Challagulla, Arjun, Kraus, Robert, Mueller, Ralf C., Tong, Marcus Z. W., Hulme, Katina D., Bielefeldt-Ohmann, Helle, Steele, Lauren E., Wu, Melanie, Sng, Julian, Noye, Ellesandra, Bruxner, Timothy J., Au, Gough G., Lowther, Suzanne, Blommaert, Julie, Suh, Alexander, McCauley, Alexander J., Kaur, Parwinder, Dudchenko, Olga, Aiden, Erez, Fedrigo, Olivier, Formenti, Giulio, Mountcastle, Jacquelyn, Chow, William, Martin, Fergal J., Ogeh, Denye N., Thiaud-Nissen, Françoise ... Short, Kirsty R. (2023). The swan genome and transcriptome, it is not all black and white. Genome Biology, 24 (1) 13, 1-24. doi: 10.1186/s13059-022-02838-0

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local : UQ:289097

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