Software

R code to analyse glycosylation on peptides

Commonwealth Scientific and Industrial Research Organisation
Escobar Correas, Sophia
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25919/3dcy-4z43&rft.title=R code to analyse glycosylation on peptides&rft.identifier=https://doi.org/10.25919/3dcy-4z43&rft.publisher=Commonwealth Scientific and Industrial Research Organisation&rft.description=Set of R codes allowing to search for glycosylation. The data this code was built was generated with TripleTOF® 6600 mass spectrometer (SCIEX) and then search with ProteinPilot software. The FDR reports generated from this search were then analysed with the set of codes. The R codes were translated to batch files. \nLineage: This R code was generated using RStudio version 4.0.5. Packages used were Tidyverse and readxl.&rft.creator=Escobar Correas, Sophia &rft.date=2021&rft.edition=v1&rft_rights=GPLv3 Licence with CSIRO Disclaimer https://research.csiro.au/dap/licences/gplv3-licence-with-csiro-disclaimer/&rft_rights=Data is accessible online and may be reused in accordance with licence conditions&rft_rights=All Rights (including copyright) CSIRO 2021.&rft_subject=Glycosylation&rft_subject=peptides&rft_subject=proteomics&rft_subject=Proteomics and metabolomics&rft_subject=Bioinformatics and computational biology&rft_subject=BIOLOGICAL SCIENCES&rft_subject=Bioinformatics and computational biology not elsewhere classified&rft_subject=Proteins and peptides&rft_subject=Medicinal and biomolecular chemistry&rft_subject=CHEMICAL SCIENCES&rft.type=Computer Program&rft.language=English Access the software
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GPLv3 Licence with CSIRO Disclaimer
https://research.csiro.au/dap/licences/gplv3-licence-with-csiro-disclaimer/

Data is accessible online and may be reused in accordance with licence conditions

All Rights (including copyright) CSIRO 2021.

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Brief description

Set of R codes allowing to search for glycosylation. The data this code was built was generated with TripleTOF® 6600 mass spectrometer (SCIEX) and then search with ProteinPilot software. The FDR reports generated from this search were then analysed with the set of codes. The R codes were translated to batch files.
Lineage: This R code was generated using RStudio version 4.0.5. Packages used were Tidyverse and readxl.

Available: 2021-08-12

Data time period: 2020-06-01 to 2021-08-31

Subjects
Biological Sciences | Bioinformatics and Computational Biology | Bioinformatics and Computational Biology Not Elsewhere Classified | Chemical Sciences | Glycosylation | Medicinal and Biomolecular Chemistry | Proteins and Peptides | Proteomics and Metabolomics | peptides | proteomics |

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