Data

Prophage statistics

Flinders University
Robert Edwards (Aggregated by)
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25451/flinders.22268722.v3&rft.title=Prophage statistics&rft.identifier=https://doi.org/10.25451/flinders.22268722.v3&rft.publisher=Flinders University&rft.description=The presence of prophages in bacterial genomes.  This file has these columns: 0. GENOMEID - Genbank genome assembly accession 1. Genome Name - Definition of the genome in the genbank file 2. Contigs > 5kb - Number of contigs longer than 5 kb (only these were used to predict prophages) 3. Genome Contigs - Total number of contigs in the genome 4. Number of Coding Sequences - Total number of coding sequences in the genome 5. Too short - Number of phage predictions that were too short (less than 5 genes in the prediction) 6. Not enough phage hits - Number of phage predictions that did not have a single HMM match to VOGdb version 99 7. Kept - Number of high quality prophage predictions 8. Note - Outcome of the computation. You should read this column, especially if the sum of prophage predictions is zero&rft.creator=Robert Edwards&rft.date=2023&rft_rights=REUSABLE-FOR-ANY-PURPOSE-(CC-BY)&rft_subject=prophage&rft_subject=bacteria&rft_subject=microbial genome&rft_subject=phage&rft_subject=bioinformatics&rft_subject=Genomics and transcriptomics&rft.type=dataset&rft.language=English Access the data
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The presence of prophages in bacterial genomes. 


This file has these columns:

0. GENOMEID - Genbank genome assembly accession

1. Genome Name - Definition of the genome in the genbank file

2. Contigs > 5kb - Number of contigs longer than 5 kb (only these were used to predict prophages)

3. Genome Contigs - Total number of contigs in the genome

4. Number of Coding Sequences - Total number of coding sequences in the genome

5. Too short - Number of phage predictions that were too short (less than 5 genes in the prediction)

6. Not enough phage hits - Number of phage predictions that did not have a single HMM match to VOGdb version 99

7. Kept - Number of high quality prophage predictions

8. Note - Outcome of the computation. You should read this column, especially if the sum of prophage predictions is zero

Issued: 2023-03-14

Created: 2023-03-19

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Subjects
Genomics and transcriptomics | bacteria | bioinformatics | microbial genome | phage | prophage |

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