Data

Placental Imprinting Pilot

The University of Queensland
Associate Professor Adam Ewing (Aggregated by) Dr Adam Ewing (Aggregated by)
Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]
ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.48610/ce7d435&rft.title=Placental Imprinting Pilot&rft.identifier=RDM ID: 150b7725-41cc-4ae3-8983-1919abd794aa&rft.publisher=The University of Queensland&rft.description=Pilot study published in Kindlova et al, preprint available with detailed data description at https://www.biorxiv.org/content/10.1101/2023.02.13.528289v1. Data consist of Nanopore sequence data on 8 placentas, Illumina WGS on 8 placentas and parents (total 24 samples), and RNA-seq data from 8 placentas, EM-seq data from two placentas, and methylartist database files for all placenta samples. All data apart from the .db files are provided as .bam files. Methylartist .db files can be used along with the corresponding .bam file via methylartist (https://doi.org/10.1093/bioinformatics/btac292) available at https://github.com/adamewing/methylartist.&rft.creator=Associate Professor Adam Ewing&rft.creator=Dr Adam Ewing&rft.date=2024&rft_rights= http://guides.library.uq.edu.au/deposit_your_data/terms_and_conditions&rft_subject=eng&rft_subject=Genomics and transcriptomics&rft_subject=Bioinformatics and computational biology&rft_subject=BIOLOGICAL SCIENCES&rft_subject=Epigenetics (incl. genome methylation and epigenomics)&rft_subject=Genetics&rft.type=dataset&rft.language=English Access the data
Cite Saved to MyRDA Save to MyRDA

Licence & Rights:

Other view details

Access:

Restrictions apply

Contact Information

adam.ewing@mater.uq.edu.au
Mater Research Institute-UQ

Full description

Pilot study published in Kindlova et al, preprint available with detailed data description at https://www.biorxiv.org/content/10.1101/2023.02.13.528289v1. Data consist of Nanopore sequence data on 8 placentas, Illumina WGS on 8 placentas and parents (total 24 samples), and RNA-seq data from 8 placentas, EM-seq data from two placentas, and methylartist database files for all placenta samples. All data apart from the .db files are provided as .bam files. Methylartist .db files can be used along with the corresponding .bam file via methylartist (https://doi.org/10.1093/bioinformatics/btac292) available at https://github.com/adamewing/methylartist.

Issued: 20 12 2024

This dataset is part of a larger collection

Click to explore relationships graph
Help

Related People

Related Websites

Subjects
Biological Sciences | Bioinformatics and Computational Biology | Epigenetics (Incl. Genome Methylation and Epigenomics) | Genetics | Genomics and Transcriptomics | eng |

User Contributed Tags    

Login to tag this record with meaningful keywords to make it easier to discover

Other Information
Methylartist: tools for visualizing modified bases from nanopore sequence data

local : UQ:156fa4c

Cheetham, Seth W., Kindlova, Michaela and Ewing, Adam D. (2022). Methylartist: tools for visualizing modified bases from nanopore sequence data. Bioinformatics, 38 (11), 3109-3112. doi: 10.1093/bioinformatics/btac292

Research Data Collections

local : UQ:289097

Identifiers