Data

NWSSRP Theme 4 - Understanding the Isolated Coral Atolls of the North West Shelf (Rowley Shoals)

Australian Institute of Marine Science
Australian Institute of Marine Science (AIMS)
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=https://apps.aims.gov.au/metadata/view/d7a7d2fe-7920-45e9-8c81-1aac24ebf73c&rft.title=NWSSRP Theme 4 - Understanding the Isolated Coral Atolls of the North West Shelf (Rowley Shoals)&rft.identifier=https://apps.aims.gov.au/metadata/view/d7a7d2fe-7920-45e9-8c81-1aac24ebf73c&rft.publisher=Australian Institute of Marine Science (AIMS)&rft.description=Theme 4 program is forging new paths in underwater monitoring by comparing traditional diver-based methods with autonomous methods, including independent machines capable of collecting data across large areas of ocean and other that can process that information very quickly. These new cost-effective technologies could shape a new age of reef monitoring across the region. The scope of work includes: 1. producing a habitat model linking the distribution of biological communities with reef structure and physical condition 2. applying the habitat model and existing data to design a monitoring program that isolates the effects of multiple pressures 3. incorporating emerging technologies, particularly autonomous and automated approaches to data acquisition and processing, that can be applied more widely. The objectives are to quantify baseline spatial dynamics of key biological communities and their physical drivers in an adaptive monitoring program that addresses processes of change and integrates new technologies for collection and processing of data.Maintenance and Update Frequency: asNeededStatement: Trip 6854 Multibeam Diver Transects (Photos) Diver Structure Video SloVid (Video and Digital Stills) BOTS (Point habitat assessments) Trip 6999 Diver Transects (Photos) Diver Structure Video Diver Operated Video (DOV's) BRUVS Drone CTD Temperature loggers Pressure and Current sensors Trip 7255 Diver Transects (Photos) Diver Structure Video Diver Operated Video (DOV's) SloVid (Video and Digital Stills) BOTS (Point habitat assessments) Temperature loggers Pressure and Current sensors Coral collections for genetic analyses Coral heat stress experiments&rft.creator=Australian Institute of Marine Science (AIMS) &rft.date=2024&rft.coverage=westlimit=118.84323120117189; southlimit=-17.709444568316773; eastlimit=119.70291137695314; northlimit=-16.988502065373595&rft.coverage=westlimit=118.84323120117189; southlimit=-17.709444568316773; eastlimit=119.70291137695314; northlimit=-16.988502065373595&rft_rights=Creative Commons Attribution-NonCommercial 3.0 Australia License http://creativecommons.org/licenses/by-nc/3.0/au/&rft_rights=Use Limitation: All AIMS data, products and services are provided as is and AIMS does not warrant their fitness for a particular purpose or non-infringement. While AIMS has made every reasonable effort to ensure high quality of the data, products and services, to the extent permitted by law the data, products and services are provided without any warranties of any kind, either expressed or implied, including without limitation any implied warranties of title, merchantability, and fitness for a particular purpose or non-infringement. AIMS make no representation or warranty that the data, products and services are accurate, complete, reliable or current. To the extent permitted by law, AIMS exclude all liability to any person arising directly or indirectly from the use of the data, products and services.&rft_rights=Attribution: Format for citation of metadata sourced from Australian Institute of Marine Science (AIMS) in a list of reference is as follows: Australian Institute of Marine Science (AIMS). (2018). NWSSRP Theme 4 - Understanding the Isolated Coral Atolls of the North West Shelf (Rowley Shoals). https://apps.aims.gov.au/metadata/view/d7a7d2fe-7920-45e9-8c81-1aac24ebf73c, accessed[date-of-access].&rft_subject=oceans&rft.type=dataset&rft.language=English Access the data
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Creative Commons Attribution-NonCommercial 3.0 Australia License
http://creativecommons.org/licenses/by-nc/3.0/au/

Use Limitation: All AIMS data, products and services are provided "as is" and AIMS does not warrant their fitness for a particular purpose or non-infringement. While AIMS has made every reasonable effort to ensure high quality of the data, products and services, to the extent permitted by law the data, products and services are provided without any warranties of any kind, either expressed or implied, including without limitation any implied warranties of title, merchantability, and fitness for a particular purpose or non-infringement. AIMS make no representation or warranty that the data, products and services are accurate, complete, reliable or current. To the extent permitted by law, AIMS exclude all liability to any person arising directly or indirectly from the use of the data, products and services.

Attribution: Format for citation of metadata sourced from Australian Institute of Marine Science (AIMS) in a list of reference is as follows: "Australian Institute of Marine Science (AIMS). (2018). NWSSRP Theme 4 - Understanding the Isolated Coral Atolls of the North West Shelf (Rowley Shoals). https://apps.aims.gov.au/metadata/view/d7a7d2fe-7920-45e9-8c81-1aac24ebf73c, accessed[date-of-access]".

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Brief description

Theme 4 program is forging new paths in underwater monitoring by comparing traditional diver-based methods with autonomous methods, including independent machines capable of collecting data across large areas of ocean and other that can process that information very quickly. These new cost-effective technologies could shape a new age of reef monitoring across the region. The scope of work includes: 1. producing a habitat model linking the distribution of biological communities with reef structure and physical condition 2. applying the habitat model and existing data to design a monitoring program that isolates the effects of multiple pressures 3. incorporating emerging technologies, particularly autonomous and automated approaches to data acquisition and processing, that can be applied more widely. The objectives are to quantify baseline spatial dynamics of key biological communities and their physical drivers in an adaptive monitoring program that addresses processes of change and integrates new technologies for collection and processing of data.

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Maintenance and Update Frequency: asNeeded
Statement: Trip 6854 Multibeam Diver Transects (Photos) Diver Structure Video SloVid (Video and Digital Stills) BOTS (Point habitat assessments) Trip 6999 Diver Transects (Photos) Diver Structure Video Diver Operated Video (DOV's) BRUVS Drone CTD Temperature loggers Pressure and Current sensors Trip 7255 Diver Transects (Photos) Diver Structure Video Diver Operated Video (DOV's) SloVid (Video and Digital Stills) BOTS (Point habitat assessments) Temperature loggers Pressure and Current sensors Coral collections for genetic analyses Coral heat stress experiments

Notes

Credit
Funding Body: Santos Ltd

Modified: 17 10 2024

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119.70291,-16.9885 119.70291,-17.70944 118.84323,-17.70944 118.84323,-16.9885 119.70291,-16.9885

119.27307128906,-17.348973316846

text: westlimit=118.84323120117189; southlimit=-17.709444568316773; eastlimit=119.70291137695314; northlimit=-16.988502065373595

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Other Information
Birt MJ, Cure K, Wilson S, Newman SJ, Harvey ES, Meekan M, Speed C, Heyward A, Goetze J, Gilmour J (2021) Isolated reefs support stable fish communities with high abundances of regionally fished species. Ecology and Evolution (early online)

doi : https://doi.org/10.1002/ece3.7370

Grimaldi, C.M., Lowe, R.J., Benthuysen, J.A., Cuttler, M.V.W., Green, R.H., Radford, B., Ryan, N. and Gilmour, J. (2022), Hydrodynamic drivers of fine-scale connectivity within a coral reef atoll. Limnology Oceanography. https://doi.org/10.1002/lno.12198

doi : https://doi.org/10.1002/lno.12198

Camille Mathilde Grimaldi. (2022). Hydrodynamic drivers of fine-scale connectivity within a coral reef atoll. Limnology and Oceanography. https://doi.org/10.5281/zenodo.6866015

doi : https://doi.org/10.5281/zenodo.6866015

Software for Adam A. A. S., et.al (2022). Population connectivity and genetic offset in the spawning coral Acropora digitifera in Western Australia. Zenodo. https://doi.org/10.5281/zenodo.6626527

doi : https://doi.org/10.5281/zenodo.6626527

Grimaldi, C.M., Lowe, R.J., Benthuysen, J.A. et al. Hydrodynamic and atmospheric drivers create distinct thermal environments within a coral reef atoll. Coral Reefs (2023). https://doi.org/10.1007/s00338-023-02371-x

doi : https://doi.org/10.1007/s00338-023-02371-x

Grimaldi, Camille, Lowe, Ryan, Benthuysen, Jessica, Green, Rebecca, Reyns, Johan, Kernkamp, Herman, & Gilmour, James. (2021). Wave and tidally driven flow dynamics within a coral reef atoll off northwestern Australia (Version v2) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.4766475

doi : https://doi.org/10.5281/zenodo.4766475

Cresswell AK, Ryan NM, Heyward AJ, Smith ANH, Colquhoun J, Case M, Birt MJ, Chinkin M, Wyatt M, Radford B, Costello P, Gilmour JP. 2021. A quantitative comparison of towed-camera and diver-camera transects for monitoring coral reefs. PeerJ 9:e11090 https://doi.org/10.7717/peerj.11090

doi : https://doi.org/10.7717/peerj.11090

Birt, M. J., Langlois, T. J., McLean, D., & Harvey, E. S. (2021). Optimal deployment durations for baited underwater video systems sampling temperate, subtropical and tropical reef fish assemblages. Journal of Experimental Marine Biology and Ecology, 538:151530

doi : https://doi.org/10.1016/j.jembe.2021.151530

Data for Thomas et al (2022) is available at the Open Science Framework (https://osf.io/2ba8p/) and sequence at NCBI Sequence Read Archive (PRJNA809112).

uri : https://osf.io/2ba8p/

Data for Adam A. A. S. et al. (2022), Population connectivity and genetic offset in the spawning coral Acropora digitifera in Western Australia, Dryad, Dataset, https://doi.org/10.5061/dryad.t1g1jwt4g

doi : https://doi.org/10.5061/dryad.t1g1jwt4g

Dugal, L., Thomas, L., Wilkinson, S.P., Richards, Z.T., Alexander, J.B., Adam, A.A., Kennington, W.J., Jarman, S., Ryan, N.M., Bunce, M. and Gilmour, J.P. (2021), Coral monitoring in northwest Australia with environmental DNA metabarcoding using a curated reference database for optimized detection. Environmental DNA.

doi : https://doi.org/10.1002/edn3.199

Thomas, L., Underwood, J. N., Rose, N. H., Fuller, Z. L., Richards, Z. T., Dugal, L., Grimaldi, C. M., Cooke, I. R., Palumbi, S. R., & Gilmour, J. P. (2022). Spatially varying selection between habitats drives physiological shifts and local adaptation in a broadcast spawning coral on a remote atoll in Western Australia. Science Advances, 8(17), eabl9185. https://doi.org/10.1126/sciadv.abl9185

doi : https://doi.org/10.1126/sciadv.abl9185

Raw sequence data (.fastq files), sample information for the 94 coral species, and R scripts for Dugal et al (2021)

doi : https://doi.org/10.5281/zenodo.4596305

Adam, A. A. S., Thomas, L., Underwood, J., Gilmour, J., & Richards, Z. T. (2022). Population connectivity and genetic offset in the spawning coral Acropora digitifera in Western Australia. Molecular Ecology, 31, 3533– 3547. https://doi.org/10.1111/mec.16498

doi : https://doi.org/10.1111/mec.16498

Rowley Shoals ITS2 coral database sequences are available on NCBI under the accession MW473514 to MW473666, as presented in Dugal et al (2021)

uri : https://www.ncbi.nlm.nih.gov/

Data for Grimaldi Camille,et al. (2022). Fine-scale temperature variability creates distinct thermal environments within a coral reef atoll. https://doi.org/10.5281/zenodo.6999217

doi : https://doi.org/10.5281/zenodo.6999217

Identifiers
  • global : d7a7d2fe-7920-45e9-8c81-1aac24ebf73c