Data

Novel reference transcriptomes for the sponges Carteriospongia foliascens and Cliona orientalis and associated algal symbiont Gerakladium endoclionum

Australian Institute of Marine Science
Australian Institute of Marine Science (AIMS)
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=https://apps.aims.gov.au/metadata/view/ab46a139-2901-4d47-910f-031a5b69c0eb&rft.title=Novel reference transcriptomes for the sponges Carteriospongia foliascens and Cliona orientalis and associated algal symbiont Gerakladium endoclionum&rft.identifier=https://apps.aims.gov.au/metadata/view/ab46a139-2901-4d47-910f-031a5b69c0eb&rft.publisher=Australian Institute of Marine Science (AIMS)&rft.description=Transcriptomic analysis of sponges that have been exposed to different environmental conditions can improve our understanding of molecular stress response pathways and enhance our ability to effectively manage these ecologically important filter feeders.Two common and widely distributed Indo-Pacific sponge species—Carteriospongia foliascens and Cliona orientalis were collected in May 2015 from Fantome Island and Pelorus Island in the Great Barrier Reef. Since C. orientalis is a bio-eroding sponge, ten C. orientalis drill cores (* 5cmindiameter) were collected from a single individual growing on a dead colony of Porites sp. An individual of C.foliascens was cut into ten pieces (see Pineda et al. 2016). Sponges were healed and acclimated under natural light and flowthrough seawater for 4 weeks before experiments were performed.Sponges were subjected to five different treatments at the Australian Institute of Marine Science (AIMS) National Sea Simulator: (i) decreased salinity, (ii) elevated temperature, (iii) elevated suspended sediment concentrations(SSCs) and sediment deposition, (iv) light attenuation, and(v) no stress control. Further details on these experiments can be found in Pineda et al. (2016).Transcriptome sequences were assembled for C. foliascens and C. ori-entalis and from the C. orientalis holobiont, i.e., host and symbiont, a partial reference transcriptome for Gerakladium endoclionum was constructed. Further details are found in the linked paper below Strehlow et al. (2021).Maintenance and Update Frequency: notPlannedStatement: References: SeaSim Experiments: Pineda M-C, Strehlow B, Duckworth A, Doyle J, Jones R, Webster NS (2016) Effects of light attenuation on the sponge holobiont-implications for dredging management. Sci Rep 6:1–13 Established protocols: Kenkel CD, Bay LK (2017) Novel transcriptome resources for threescleractinian coral species from the Indo-Pacific Gigascience 6:1-4 Full details and quality controls have been described in the paper: Strehlow, B.W., Pineda, MC., Kenkel, C.D. et al. Novel reference transcriptomes for the sponges Carteriospongia foliascens and Cliona orientalis and associated algal symbiont Gerakladium endoclionum. Coral Reefs 40, 9–13 (2021). https://doi.org/10.1007/s00338-020-02028-z&rft.creator=Australian Institute of Marine Science (AIMS) &rft.date=2026&rft.coverage=westlimit=146.511767; southlimit=-18.6838; eastlimit=146.511767; northlimit=-18.6838&rft.coverage=westlimit=146.511767; southlimit=-18.6838; eastlimit=146.511767; northlimit=-18.6838&rft.coverage=westlimit=146.4862; southlimit=-18.548383; eastlimit=146.4862; northlimit=-18.548383&rft.coverage=westlimit=146.4862; southlimit=-18.548383; eastlimit=146.4862; northlimit=-18.548383&rft_rights=Creative Commons Attribution 3.0 Australia License http://creativecommons.org/licenses/by/3.0/au/&rft_rights=Use Limitation: All AIMS data, products and services are provided as is and AIMS does not warrant their fitness for a particular purpose or non-infringement. While AIMS has made every reasonable effort to ensure high quality of the data, products and services, to the extent permitted by law the data, products and services are provided without any warranties of any kind, either expressed or implied, including without limitation any implied warranties of title, merchantability, and fitness for a particular purpose or non-infringement. AIMS make no representation or warranty that the data, products and services are accurate, complete, reliable or current. To the extent permitted by law, AIMS exclude all liability to any person arising directly or indirectly from the use of the data, products and services.&rft_rights=Attribution: Format for citation of metadata sourced from Australian Institute of Marine Science (AIMS) in a list of reference is as follows: Australian Institute of Marine Science (AIMS). (2021). Novel reference transcriptomes for the sponges Carteriospongia foliascens and Cliona orientalis and associated algal symbiont Gerakladium endoclionum. https://apps.aims.gov.au/metadata/view/ab46a139-2901-4d47-910f-031a5b69c0eb, accessed[date-of-access].&rft_subject=oceans&rft_subject=aminoacyl-tRNA synthetase (AARS)&rft.type=dataset&rft.language=English Access the data
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Creative Commons Attribution 3.0 Australia License
http://creativecommons.org/licenses/by/3.0/au/

Use Limitation: All AIMS data, products and services are provided "as is" and AIMS does not warrant their fitness for a particular purpose or non-infringement. While AIMS has made every reasonable effort to ensure high quality of the data, products and services, to the extent permitted by law the data, products and services are provided without any warranties of any kind, either expressed or implied, including without limitation any implied warranties of title, merchantability, and fitness for a particular purpose or non-infringement. AIMS make no representation or warranty that the data, products and services are accurate, complete, reliable or current. To the extent permitted by law, AIMS exclude all liability to any person arising directly or indirectly from the use of the data, products and services.

Attribution: Format for citation of metadata sourced from Australian Institute of Marine Science (AIMS) in a list of reference is as follows: "Australian Institute of Marine Science (AIMS). (2021). Novel reference transcriptomes for the sponges Carteriospongia foliascens and Cliona orientalis and associated algal symbiont Gerakladium endoclionum. https://apps.aims.gov.au/metadata/view/ab46a139-2901-4d47-910f-031a5b69c0eb, accessed[date-of-access]".

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Full description

Transcriptomic analysis of sponges that have been exposed to different environmental conditions can improve our understanding of molecular stress response pathways and enhance our ability to effectively manage these ecologically important filter feeders.


Two common and widely distributed Indo-Pacific sponge species—Carteriospongia foliascens and Cliona orientalis were collected in May 2015 from Fantome Island and Pelorus Island in the Great Barrier Reef. Since C. orientalis is a bio-eroding sponge, ten C. orientalis drill cores (* 5cmin


diameter) were collected from a single individual growing on a dead colony of Porites sp. An individual of C.foliascens was cut into ten pieces (see Pineda et al. 2016). Sponges were healed and acclimated under natural light and flowthrough seawater for 4 weeks before experiments were performed.


Sponges were subjected to five different treatments at the Australian Institute of Marine Science (AIMS) National Sea Simulator: (i) decreased salinity, (ii) elevated temperature, (iii) elevated suspended sediment concentrations(SSCs) and sediment deposition, (iv) light attenuation, and(v) no stress control. Further details on these experiments can be found in Pineda et al. (2016).


Transcriptome sequences were assembled for C. foliascens and C. ori-entalis and from the C. orientalis holobiont, i.e., host and symbiont, a partial reference transcriptome for Gerakladium endoclionum was constructed. Further details are found in the linked paper below Strehlow et al. (2021).

Lineage

Maintenance and Update Frequency: notPlanned
Statement: References: SeaSim Experiments: Pineda M-C, Strehlow B, Duckworth A, Doyle J, Jones R, Webster NS (2016) Effects of light attenuation on the sponge holobiont-implications for dredging management. Sci Rep 6:1–13 Established protocols: Kenkel CD, Bay LK (2017) Novel transcriptome resources for threescleractinian coral species from the Indo-Pacific Gigascience 6:1-4 Full details and quality controls have been described in the paper: Strehlow, B.W., Pineda, MC., Kenkel, C.D. et al. Novel reference transcriptomes for the sponges Carteriospongia foliascens and Cliona orientalis and associated algal symbiont Gerakladium endoclionum. Coral Reefs 40, 9–13 (2021). https://doi.org/10.1007/s00338-020-02028-z

Notes

Credit
Webster, NS (AIMS & WAMSI) and University of Queensland (UQ)
Credit
Pineda, MC (AIMS & WAMSI)
Credit
Clode, PL (UWA)
Credit
Laffy, P (AIMS & WAMSI)
Credit
Renton, M (UWA)
Credit
Strehlow, BW. University of Southern Denmark, University of Western Australia (UWA), Australian Institute of Marine Science (AIMS), Western Australian Marine Science Institution (WAMSI)
Credit
Kenkel, CD (AIMS) and University of Southern California, USA
Credit
Duckworth, A (AIMS & WAMSI)

Modified: 25 09 2026

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146.51177,-18.6838

146.511767,-18.6838

146.4862,-18.54838

146.4862,-18.548383

text: westlimit=146.511767; southlimit=-18.6838; eastlimit=146.511767; northlimit=-18.6838

text: westlimit=146.4862; southlimit=-18.548383; eastlimit=146.4862; northlimit=-18.548383

Subjects
aminoacyl-tRNA synthetase (AARS) | oceans |

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Other Information
Strehlow, B.W., Pineda, MC., Kenkel, C.D. et al. Novel reference transcriptomes for the sponges Carteriospongia foliascens and Cliona orientalis and associated algal symbiont Gerakladium endoclionum. Coral Reefs 40, 9–13 (2021). https://doi.org/10.1007/s00338-020-02028-z

doi : https://doi.org/10.1007/s00338-020-02028-z

Raw data is deposited in NCBI’s SRA under accession numbers PRJNA639714 and PRJNA639798 for the C. orientalis holobiont and C. foliascens

url : https://www.ncbi.nlm.nih.gov/

These scripts were used for trimming, assembly and annotation of transcriptomes for the marine sponges (Porifera) Carteriospongia foliascens and Cliona orientalis as well as Gerakladium endoclionum (algal endosymbiont of C. orientalis).

url : https://github.com/bstrehlow/Transcriptome_assembly/tree/master

transcriptome_data_final.zip [size 2.53 GB]

url : https://data.aims.gov.au/data-download/ab46a139-2901-4d47-910f-031a5b69c0eb/transcriptome_data_final.zip

Identifiers
  • global : ab46a139-2901-4d47-910f-031a5b69c0eb
ACN 633 798 857