Data

Marine Genomics: Sea Sponge and Other Invertebrate Genomic Resources for the Great Barrier Reef

The University of Queensland
Dr Selene Fernandez Valverde (Aggregated by) Ms Marie Gauthier (Aggregated by) Professor Bernard Degnan (Aggregated by) Professor Bernard Degnan (Aggregated by) Professor Sandie Degnan (Aggregated by)
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.48610/9e2e4bc&rft.title=Marine Genomics: Sea Sponge and Other Invertebrate Genomic Resources for the Great Barrier Reef&rft.identifier=10.48610/9e2e4bc&rft.publisher=The University of Queensland&rft.description=The existing data collection largely revolves around the premier model to understand the evolution of animals and their symbionts – the tropical Great Barrier Reef demosponge Amphimedon queenslandica - but increasingly includes other genome and transcriptome projects with basic, strategic and applied research outcomes (e.g. the pearl oyster Pinctada maxima and the pest Crown-of-Thorns starfish Acanthaster planci).The addition of other marine genomes and transcriptomes (e.g. Pinctada maxima and Acanthaster planci) into this data collection enable collaborations with local universities and institutes and with Australian industry partners, in addition to a large diversity of international partners. Each of these interactions provide unique platforms to expand the use of genomic information in marine science, particularly in tropical Australia.Genomic data and resources, including (i) draft genome annotated assemblies, (ii) associated annotated metagenome assemblies, (iii) developmental and tissue-restricted transcriptomes and other RNA-Seq data, (iv) ChIP-Seq and other maps of transcriptional regulatory regions, (v) chromatin states, and (vi) peptidomes, for Amphimedon queenslandica and other marine sponges, Pinctada maxima and other marine molluscs, and other Great Barrier Reef invertebrates, including Acanthaster planci.&rft.creator=Dr Selene Fernandez Valverde&rft.creator=Ms Marie Gauthier&rft.creator=Professor Bernard Degnan&rft.creator=Professor Bernard Degnan&rft.creator=Professor Sandie Degnan&rft.creator=Professor Sandie Degnan&rft.date=2013&rft_rights=2023, The University of Queensland&rft_rights= http://guides.library.uq.edu.au/deposit_your_data/terms_and_conditions&rft_subject=eng&rft_subject=Marine genomics&rft_subject=Amphimedon queenslandica&rft_subject=Pinctada maxima&rft_subject=Acanthaster planci&rft_subject=Sea sponges&rft_subject=Great Barrier Reef&rft_subject=Systems Biology&rft_subject=BIOLOGICAL SCIENCES&rft_subject=BIOCHEMISTRY AND CELL BIOLOGY&rft_subject=Evolution of Developmental Systems&rft_subject=EVOLUTIONARY BIOLOGY&rft_subject=Gene Expression (incl. Microarray and other genome-wide approaches)&rft_subject=GENETICS&rft_subject=Genome Structure and Regulation&rft_subject=Genomics&rft_subject=Molecular Evolution&rft_subject=Invertebrate Biology&rft_subject=ZOOLOGY&rft_subject=Aquaculture&rft_subject=AGRICULTURAL AND VETERINARY SCIENCES&rft_subject=FISHERIES SCIENCES&rft_subject=Agricultural Marine Biotechnology&rft_subject=TECHNOLOGY&rft_subject=AGRICULTURAL BIOTECHNOLOGY&rft.type=dataset&rft.language=English Access the data
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The existing data collection largely revolves around the premier model to understand the evolution of animals and their symbionts – the tropical Great Barrier Reef demosponge Amphimedon queenslandica - but increasingly includes other genome and transcriptome projects with basic, strategic and applied research outcomes (e.g. the pearl oyster Pinctada maxima and the pest Crown-of-Thorns starfish Acanthaster planci).The addition of other marine genomes and transcriptomes (e.g. Pinctada maxima and Acanthaster planci) into this data collection enable collaborations with local universities and institutes and with Australian industry partners, in addition to a large diversity of international partners. Each of these interactions provide unique platforms to expand the use of genomic information in marine science, particularly in tropical Australia.Genomic data and resources, including (i) draft genome annotated assemblies, (ii) associated annotated metagenome assemblies, (iii) developmental and tissue-restricted transcriptomes and other RNA-Seq data, (iv) ChIP-Seq and other maps of transcriptional regulatory regions, (v) chromatin states, and (vi) peptidomes, for Amphimedon queenslandica and other marine sponges, Pinctada maxima and other marine molluscs, and other Great Barrier Reef invertebrates, including Acanthaster planci.

Issued: 2013

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Subjects
Agricultural and Veterinary Sciences | Agricultural Biotechnology | Acanthaster planci | Agricultural Marine Biotechnology | Amphimedon queenslandica | Aquaculture | Biochemistry and Cell Biology | Biological Sciences | Evolutionary Biology | Evolution of Developmental Systems | Fisheries Sciences | Genetics | Gene Expression (Incl. Microarray and Other Genome-Wide Approaches) | Genome Structure and Regulation | Genomics | Great Barrier Reef | Invertebrate Biology | Marine genomics | Molecular Evolution | Pinctada maxima | Sea sponges | Systems Biology | Technology | Zoology | eng |

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Deep developmental transcriptome sequencing uncovers numerous new genes and enhances gene annotation in the sponge Amphimedon queenslandica

local : UQ:360787

Fernandez-Valverde, Selene L., Calcino, Andrew D. and Degnan, Bernard M. (2015). Deep developmental transcriptome sequencing uncovers numerous new genes and enhances gene annotation in the sponge Amphimedon queenslandica. BMC Genomics, 16 (1) 387, 1-11. doi: 10.1186/s12864-015-1588-z

Transcriptome profiling of the demosponge Amphimedon queenslandica reveals genome-wide events that accompany major life cycle transitions

local : UQ:284185

Conaco, Cecilia, Neveu, Pierre, Zhou, Hongjun, Arcila, Mary L., Degnan, Sandie M., Degnan, Bernard M. and Kosik, Kenneth S. (2012). Transcriptome profiling of the demosponge Amphimedon queenslandica reveals genome-wide events that accompany major life cycle transitions. BMC Genomics, 13 (1) 209, 209.1-209.19. doi: 10.1186/1471-2164-13-209

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local : UQ:5d1d4fb

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local : UQ:289097

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