Software

Junction Analysis

Monash University
Cameron Nowell (Aggregated by)
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.26180/19672035.v1&rft.title=Junction Analysis&rft.identifier=https://doi.org/10.26180/19672035.v1&rft.publisher=Monash University&rft.description=Fiji/ImageJ macro for analysis cell tight junctions using TiJOR analys adapted from Terryn et al (2013) Cytometry Part A Macro was developed by Cameron J Nowell of Monash University ([email protected]) in collaboration with Ami Mehta ([email protected]). Code will take Leica LIF files Analysis will extract the junction channel (assumed to be channel 3) and analyse  the TiJOR values Requirements - Standard install of Fiji  Assumptions   - Data is in Leica LIF format  - Data is 3 channel  - Junction stain (e.g. VE-cadherin) is in the 3rd channel&rft.creator=Cameron Nowell&rft.date=2022&rft_rights=CC-BY-4.0&rft_subject=ImageJ macro&rft_subject=FIJI macro&rft_subject=junction analysis&rft_subject=Neuroscience&rft.type=Computer Program&rft.language=English Access the software
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Fiji/ImageJ macro for analysis cell tight junctions using TiJOR analys adapted from Terryn et al (2013) Cytometry Part A


Macro was developed by Cameron J Nowell of Monash University ([email protected]) in collaboration with Ami Mehta ([email protected]).


Code will take Leica LIF files Analysis will extract the junction channel (assumed to be channel 3) and analyse 

the TiJOR values


Requirements - Standard install of Fiji 

Assumptions 

 - Data is in Leica LIF format

 - Data is 3 channel

 - Junction stain (e.g. VE-cadherin) is in the 3rd channel

Issued: 2022-04-28

Created: 2022-04-28

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Subjects
FIJI macro | ImageJ macro | Neuroscience | junction analysis |

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Identifiers
ACN 633 798 857