Software

Homo version 1.3

Commonwealth Scientific and Industrial Research Organisation

Jermiin, Lars

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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.4225/08/5a56c7a9e4c2a&rft.title=Homo version 1.3&rft.identifier=https://doi.org/10.4225/08/5a56c7a9e4c2a&rft.publisher=Commonwealth Scientific and Industrial Research Organisation&rft.description=A program for analysing compositional heterogeneity across aligned sequence data.\n\nMost model-based molecular phylogenetic methods assume evolution under stationary, reversible, and globally homogeneous conditions, implying that it would be unwise to use these methods if the data evolved under more complex conditions. Homo allows users to test whether pairs of sequences in alignments of nucleotides or amino acids are consistent with evolution under stationary, reversible, and globally homogeneous conditions (for details, see Ababneh et al. 2006b).\n\nThe output is a: Brief summary (printed to the terminal); Full summary (printed to a file); Five tables (printed to files), one with the p-values and four with the compositional distances.\n\nThe summaries allow users to determine whether some of the sequences violate the assumption of evolution under stationary, reversible, and globally homogeneous conditions.\n\nFor further details, see the manual, which is included with the software.&rft.creator=Jermiin, Lars &rft.date=2018&rft.edition=v1&rft.relation=https://doi.org/10.1016/j.ympev.2012.09.018&rft_rights=CSIRO Open Source Software Licence (Based on MIT/BSD Open Source Licence) https://research.csiro.au/dap/licences/csiro-open-source-software-licence-based-on-mit-bsd-open-source-licence/&rft_rights=Data is accessible online and may be reused in accordance with licence conditions&rft_rights=All Rights (including copyright) CSIRO, University of Sydney 2017.&rft_subject=Homo 1.3 Software&rft_subject=Bioinformatics&rft_subject=nucleotide sequences&rft_subject=phylogenetic tree&rft_subject=Bioinformatics and computational biology not elsewhere classified&rft_subject=Bioinformatics and computational biology&rft_subject=BIOLOGICAL SCIENCES&rft_subject=Applications in life sciences&rft_subject=Applied computing&rft_subject=INFORMATION AND COMPUTING SCIENCES&rft.type=Computer Program&rft.language=English Access the software

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CSIRO Open Source Software Licence (Based on MIT/BSD Open Source Licence)
https://research.csiro.au/dap/licences/csiro-open-source-software-licence-based-on-mit-bsd-open-source-licence/

Data is accessible online and may be reused in accordance with licence conditions

All Rights (including copyright) CSIRO, University of Sydney 2017.

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Brief description

A program for analysing compositional heterogeneity across aligned sequence data.

Most model-based molecular phylogenetic methods assume evolution under stationary, reversible, and globally homogeneous conditions, implying that it would be unwise to use these methods if the data evolved under more complex conditions. Homo allows users to test whether pairs of sequences in alignments of nucleotides or amino acids are consistent with evolution under stationary, reversible, and globally homogeneous conditions (for details, see Ababneh et al. 2006b).

The output is a: Brief summary (printed to the terminal); Full summary (printed to a file); Five tables (printed to files), one with the p-values and four with the compositional distances.

The summaries allow users to determine whether some of the sequences violate the assumption of evolution under stationary, reversible, and globally homogeneous conditions.

For further details, see the manual, which is included with the software.

Available: 2018-01-11

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Subjects

Applications in Life Sciences | Applied Computing | Biological Sciences | Bioinformatics | Bioinformatics and Computational Biology | Bioinformatics and Computational Biology Not Elsewhere Classified | Homo 1.3 Software | Information and Computing Sciences | nucleotide sequences | phylogenetic tree |

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Identifiers

DOI : 10.4225/08/5A56C7A9E4C2A
Local : 102.100.100/62790

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