Software

Hetero version 2.0

Commonwealth Scientific and Industrial Research Organisation

Jayaswal, Vivek ; Wong, Thomas KF ; Robinson, John ; Poladian, Leon ; Jermiin, Lars

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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.4225/08/59309c0f46a11&rft.title=Hetero version 2.0&rft.identifier=https://doi.org/10.4225/08/59309c0f46a11&rft.publisher=Commonwealth Scientific and Industrial Research Organisation&rft.description=A program to simulate the evolution of DNA under the mixture models of heterogeneity across lineage and heterogeneity across sites.\n\nHetero was written to facilitate the development and testing of phylogenetic methods.\n\nIn particular, Hetero 2 allows the user to generate nucleotide sequences on a phylogenetic tree under complex conditions.\n\nThe complexity of the conditions are such that the evolutionary process can differ from site to site in the DNA as well as from edge to edge in the phylogenetic tree, with the evolutionary process being the variable.\n\nThe output is a set of alignments of nucleotides.\n\nFor further details, see the manual, which is included with the software.&rft.creator=Jayaswal, Vivek &rft.creator=Wong, Thomas KF &rft.creator=Robinson, John &rft.creator=Poladian, Leon &rft.creator=Jermiin, Lars &rft.date=2017&rft.edition=v1&rft.relation=http://doi.org/10.1093/sysbio/syu036&rft_rights=CSIRO Open Source Software Licence (Based on MIT/BSD Open Source Licence) https://research.csiro.au/dap/licences/csiro-open-source-software-licence-based-on-mit-bsd-open-source-licence/&rft_rights=Data is accessible online and may be reused in accordance with licence conditions&rft_rights=All Rights (including copyright) CSIRO 2014.&rft_subject=Hetero 2.0 Software&rft_subject=Bioinformatics&rft_subject=nucleotide sequences&rft_subject=phylogenetic tree&rft_subject=Bioinformatics and computational biology not elsewhere classified&rft_subject=Bioinformatics and computational biology&rft_subject=BIOLOGICAL SCIENCES&rft_subject=Applications in life sciences&rft_subject=Applied computing&rft_subject=INFORMATION AND COMPUTING SCIENCES&rft.type=Computer Program&rft.language=English Access the software

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CSIRO Open Source Software Licence (Based on MIT/BSD Open Source Licence)
https://research.csiro.au/dap/licences/csiro-open-source-software-licence-based-on-mit-bsd-open-source-licence/

Data is accessible online and may be reused in accordance with licence conditions

All Rights (including copyright) CSIRO 2014.

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Brief description

A program to simulate the evolution of DNA under the mixture models of heterogeneity across lineage and heterogeneity across sites.

Hetero was written to facilitate the development and testing of phylogenetic methods.

In particular, Hetero 2 allows the user to generate nucleotide sequences on a phylogenetic tree under complex conditions.

The complexity of the conditions are such that the evolutionary process can differ from site to site in the DNA as well as from edge to edge in the phylogenetic tree, with the evolutionary process being the variable.

The output is a set of alignments of nucleotides.

For further details, see the manual, which is included with the software.

Available: 2017-06-02

Subjects

Applications in Life Sciences | Applied Computing | Biological Sciences | Bioinformatics | Bioinformatics and Computational Biology | Bioinformatics and Computational Biology Not Elsewhere Classified | Hetero 2.0 Software | Information and Computing Sciences | nucleotide sequences | phylogenetic tree |

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