Data

Global Typhoid Genomics Consortium 2022 - Genome Assemblies

Monash University
Kathryn Holt (Aggregated by)
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.26180/21431883.v1&rft.title=Global Typhoid Genomics Consortium 2022 - Genome Assemblies&rft.identifier=https://doi.org/10.26180/21431883.v1&rft.publisher=Monash University&rft.description=Whole genome assemblies of Salmonella enterica serovar Typhi assembled for the Global Typhoid Genomics Consortium paper: Global diversity and antimicrobial resistance of typhoid fever pathogens: insights from 13,000 Salmonella Typhi genomes (BioRxiv, 2022).  Total n=13,000 genomes, each is gzipped fasta format and then grouped into tar balls based on genotype. Genomes are listed in CSV file TGC_data.csv which includes source and quality information, accessions for raw reads, and genome-derived genotype and AMR variables.&rft.creator=Kathryn Holt&rft.date=2023&rft_rights=CC-BY-4.0&rft_subject=Typhoid fever&rft_subject=Genomic Epidemiology&rft_subject=genome assembly&rft_subject=antimicrobial resistance&rft.type=dataset&rft.language=English Access the data
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Whole genome assemblies of Salmonella enterica serovar Typhi assembled for the Global Typhoid Genomics Consortium paper: "Global diversity and antimicrobial resistance of typhoid fever pathogens: insights from 13,000 Salmonella Typhi genomes" (BioRxiv, 2022). 


Total n=13,000 genomes, each is gzipped fasta format and then grouped into tar balls based on genotype.


Genomes are listed in CSV file TGC_data.csv which includes source and quality information, accessions for raw reads, and genome-derived genotype and AMR variables.

Issued: 2023-02-09

Created: 2023-02-09

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Subjects
Genomic Epidemiology | Typhoid fever | antimicrobial resistance | genome assembly |

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