Data

Gingin Flux Data Release 2022_v2

Terrestrial Ecosystem Research Network
Silberstein, Richard ; Lambert, Patricia ; Lardner, Tim ; Macfarlane, Craig Kenneth
Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]
ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25901/jp5q-mj06&rft.title=Gingin Flux Data Release 2022_v2&rft.identifier=10.25901/jp5q-mj06&rft.publisher=Terrestrial Ecosystem Research Network&rft.description=This release consists of flux tower measurements of the exchange of energy and mass between the surface and the atmospheric boundary-layer using eddy covariance techniques. Data were processed using PyFluxPro (v3.4.7) as described by Isaac et al. (2017). PyFluxPro produces a final, gap-filled product with Net Ecosystem Exchange (NEE) partitioned into Gross Primary Productivity (GPP) and Ecosystem Respiration (ER). The Gingin site was established in June 2011 by CSIRO and is now managed by Edith Cowan University Centre for Ecosystem Management. The site is a natural woodland of high species diversity. The overstorey is dominated by Banksia spp. mainly Banksia menziesii, Banksia attenuata, and Banksia grandis with a height of around 7 m and leaf area index of about 0.8. There are occasional stands of eucalypts and acacia that reach to 10 m and have a denser foliage cover. There are many former wetlands dotted around the woodland, most of which were inundated all winter and some had permanent water 30 years ago. The watertable has now fallen below the base of these systems and they are disconnected and are no longer permanently wet. The fine sediments, sometimes diatomaceous, hold water and they have perched watertables each winter. There is a natural progression of species accompanying this process as they gradually become more dominated by more xeric species. The soils are mainly Podosol sands, with low moisture holding capacity. Field capacity typically about 8 to 10 %; and in summer these generally hold less than 2 % moisture. The water table is at about 8.5 m below the surface, and a WA Dept of water long-term monitoring piezometer is near the base of the tower. The instrument mast is 14.8 m tall, with the eddy covariance instruments mounted at 14.8 m. Fluxes of carbon dioxide, water vapour and heat are quantified with open-path eddy covariance instrumentation. Ancillary measurements include temperature, air humidity, wind speed and direction, precipitation, incoming and outgoing shortwave radiation, incoming and outgoing long wave radiation, incoming total and diffuse PAR and reflected PAR. Soil water content and temperature are measured at six soil depths. Surface soil heat fluxes are also measured. A COSMOS Cosmic ray soil moisture instrument is installed, along with a logged piezometer, and nested piezometers installed with short screens for groundwater profile sampling. To monitor the watertable gradient, piezometers will be installed 500 m east and west of the tower. All flux raw data is subject to the quality control process OzFlux QA/QC to generate data from L1 to L6. Levels 3 to 6 are available for re-use. Datasets contain Quality Controls flags which will indicate when data quality is poor and has been filled from alternative sources. For more details, refer to Isaac et al. (2017).Progress Code: onGoingMaintenance and Update Frequency: biannually&rft.creator=Silberstein, Richard &rft.creator=Lambert, Patricia &rft.creator=Lardner, Tim &rft.creator=Macfarlane, Craig Kenneth &rft.date=2024&rft.edition=2022_v2&rft.relation=https://doi.org/10.5194/bg-13-5895-2016&rft.coverage=The Gingin flux station is located on the Swan Coastal Plain 70km north of Perth, Western Australia, and 2km south of the University of Western Australia International Gravity Wave Observatory.&rft.coverage=northlimit=-31.376351; southlimit=-31.376351; westlimit=115.71377; eastLimit=115.71377; projection=EPSG:4326&rft_rights=Creative Commons Attribution 4.0 International Licence http://creativecommons.org/licenses/by/4.0&rft_rights=&rft_rights=TERN services are provided on an “as-is” and “as available” basis. Users use any TERN services at their discretion and risk. They will be solely responsible for any damage or loss whatsoever that results from such use including use of any data obtained through TERN and any analysis performed using the TERN infrastructure. <br /><br />Web links to and from external, third party websites should not be construed as implying any relationships with and/or endorsement of the external site or its content by TERN.<br /><br />Please advise any work or publications that use this data via the online form at https://www.tern.org.au/research-publications/#reporting&rft_rights=Please cite this dataset as {Author} ({PublicationYear}). {Title}. {Version, as appropriate}. Terrestrial Ecosystem Research Network. Dataset. {Identifier}.&rft_subject=climatologyMeteorologyAtmosphere&rft_subject=BIOGEOCHEMICAL PROCESSES&rft_subject=EARTH SCIENCE&rft_subject=SOLID EARTH&rft_subject=GEOCHEMISTRY&rft_subject=LAND PRODUCTIVITY&rft_subject=LAND SURFACE&rft_subject=LAND USE/LAND COVER&rft_subject=EVAPOTRANSPIRATION&rft_subject=ATMOSPHERE&rft_subject=ATMOSPHERIC WATER VAPOR&rft_subject=TERRESTRIAL ECOSYSTEMS&rft_subject=BIOSPHERE&rft_subject=ATMOSPHERIC PRESSURE MEASUREMENTS&rft_subject=ATMOSPHERIC PRESSURE&rft_subject=TURBULENCE&rft_subject=WIND SPEED&rft_subject=WIND DIRECTION&rft_subject=TRACE GASES/TRACE SPECIES&rft_subject=ATMOSPHERIC CHEMISTRY&rft_subject=ATMOSPHERIC CARBON DIOXIDE&rft_subject=PHOTOSYNTHETICALLY ACTIVE RADIATION&rft_subject=LONGWAVE RADIATION&rft_subject=SHORTWAVE RADIATION&rft_subject=INCOMING SOLAR RADIATION&rft_subject=ATMOSPHERIC RADIATION&rft_subject=HEAT FLUX&rft_subject=AIR TEMPERATURE&rft_subject=ATMOSPHERIC TEMPERATURE&rft_subject=SURFACE TEMPERATURE&rft_subject=PRECIPITATION AMOUNT&rft_subject=PRECIPITATION&rft_subject=HUMIDITY&rft_subject=SOIL MOISTURE/WATER CONTENT&rft_subject=SOIL TEMPERATURE&rft_subject=ATMOSPHERIC SCIENCES&rft_subject=EARTH SCIENCES&rft_subject=ECOLOGICAL APPLICATIONS&rft_subject=ENVIRONMENTAL SCIENCES&rft_subject=Ecosystem Function&rft_subject=ENVIRONMENTAL SCIENCE AND MANAGEMENT&rft_subject=Environmental Monitoring&rft_subject=SOIL SCIENCES&rft_subject=Gingin Flux Station&rft_subject=LI-COR LI-7500&rft_subject=Middleton CN3&rft_subject=Kipp&Zonen CNR1&rft_subject=HyQuest Solutions CS700&rft_subject=Vaisala HMP155&rft_subject=Campbell Scientific CS616&rft_subject=Campbell Scientific 108&rft_subject=Campbell Scientific TCAV Averaging Soil Thermocouple Probe&rft_subject=Campbell Scientific CSAT3&rft_subject=Gill Windsonic4&rft_subject=Campbell Scientific CS650&rft_subject=surface upward latent heat flux (Watt per Square Meter)&rft_subject=Watt per Square Meter&rft_subject=soil electrical conductivity (decisiemens per metre)&rft_subject=decisiemens per metre&rft_subject=surface upward mole flux of carbon dioxide (Micromoles per square metre second)&rft_subject=Micromoles per square metre second&rft_subject=gross primary productivity (Micromoles per square metre second)&rft_subject=net ecosystem productivity (Micromoles per square metre second)&rft_subject=water vapor saturation deficit in air (Kilopascal)&rft_subject=Kilopascal&rft_subject=mole fraction of carbon dioxide in air (Micromoles per mole)&rft_subject=Micromoles per mole&rft_subject=ecosystem respiration (Micromoles per square metre second)&rft_subject=surface upwelling shortwave flux in air (Watt per Square Meter)&rft_subject=surface downwelling longwave flux in air (Watt per Square Meter)&rft_subject=lateral component of wind speed (Meter per Second)&rft_subject=Meter per Second&rft_subject=surface upward sensible heat flux (Watt per Square Meter)&rft_subject=water evapotranspiration flux (Kilograms per square metre per second)&rft_subject=Kilograms per square metre per second&rft_subject=surface net downward radiative flux (Watt per Square Meter)&rft_subject=mass concentration of water vapor in air (Gram per Cubic Meter)&rft_subject=Gram per Cubic Meter&rft_subject=volume fraction of condensed water in soil (Cubic Meter per Cubic Meter)&rft_subject=Cubic Meter per Cubic Meter&rft_subject=specific humidity (Kilogram per Kilogram)&rft_subject=Kilogram per Kilogram&rft_subject=surface air pressure (Kilopascal)&rft_subject=soil temperature (degree Celsius)&rft_subject=degree Celsius&rft_subject=wind speed (Meter per Second)&rft_subject=surface upwelling longwave flux in air (Watt per Square Meter)&rft_subject=vertical wind (Meter per Second)&rft_subject=downward heat flux at ground level in soil (Watt per Square Meter)&rft_subject=mole fraction of water vapor in air (Millimoles per mole)&rft_subject=Millimoles per mole&rft_subject=water vapor partial pressure in air (Kilopascal)&rft_subject=Monin-Obukhov length (Meter)&rft_subject=Meter&rft_subject=longitudinal component of wind speed (Square metres per square second)&rft_subject=Square metres per square second&rft_subject=relative humidity (Percent)&rft_subject=Percent&rft_subject=surface friction velocity (Meter per Second)&rft_subject=surface upward flux of available energy (Watt per Square Meter)&rft_subject=specific humidity saturation deficit in air (Kilogram per Kilogram)&rft_subject=air temperature (degree Celsius)&rft_subject=net ecosystem exchange (Micromoles per square metre second)&rft_subject=magnitude of surface downward stress (Kilograms per metre per square second)&rft_subject=Kilograms per metre per square second&rft_subject=surface downwelling shortwave flux in air (Watt per Square Meter)&rft_subject=thickness of rainfall amount (Millimetre)&rft_subject=Millimetre&rft_subject=wind from direction (Degree)&rft_subject=Degree&rft_subject=Point Resolution&rft_subject=1 minute - < 1 hour&rft_subject=AU-Gin&rft_subject=banksia heath woodland&rft.type=dataset&rft.language=English Access the data

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TERN services are provided on an “as-is” and “as available” basis. Users use any TERN services at their discretion and risk. They will be solely responsible for any damage or loss whatsoever that results from such use including use of any data obtained through TERN and any analysis performed using the TERN infrastructure.

Web links to and from external, third party websites should not be construed as implying any relationships with and/or endorsement of the external site or its content by TERN.

Please advise any work or publications that use this data via the online form at https://www.tern.org.au/research-publications/#reporting

Please cite this dataset as {Author} ({PublicationYear}). {Title}. {Version, as appropriate}. Terrestrial Ecosystem Research Network. Dataset. {Identifier}.

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Brief description


This release consists of flux tower measurements of the exchange of energy and mass between the surface and the atmospheric boundary-layer using eddy covariance techniques. Data were processed using PyFluxPro (v3.4.7) as described by Isaac et al. (2017). PyFluxPro produces a final, gap-filled product with Net Ecosystem Exchange (NEE) partitioned into Gross Primary Productivity (GPP) and Ecosystem Respiration (ER).

The Gingin site was established in June 2011 by CSIRO and is now managed by Edith Cowan University Centre for Ecosystem Management. The site is a natural woodland of high species diversity. The overstorey is dominated by Banksia spp. mainly Banksia menziesii, Banksia attenuata, and Banksia grandis with a height of around 7 m and leaf area index of about 0.8. There are occasional stands of eucalypts and acacia that reach to 10 m and have a denser foliage cover. There are many former wetlands dotted around the woodland, most of which were inundated all winter and some had permanent water 30 years ago. The watertable has now fallen below the base of these systems and they are disconnected and are no longer permanently wet. The fine sediments, sometimes diatomaceous, hold water and they have perched watertables each winter. There is a natural progression of species accompanying this process as they gradually become more dominated by more xeric species. The soils are mainly Podosol sands, with low moisture holding capacity. Field capacity typically about 8 to 10 %; and in summer these generally hold less than 2 % moisture. The water table is at about 8.5 m below the surface, and a WA Dept of water long-term monitoring piezometer is near the base of the tower. The instrument mast is 14.8 m tall, with the eddy covariance instruments mounted at 14.8 m. Fluxes of carbon dioxide, water vapour and heat are quantified with open-path eddy covariance instrumentation. Ancillary measurements include temperature, air humidity, wind speed and direction, precipitation, incoming and outgoing shortwave radiation, incoming and outgoing long wave radiation, incoming total and diffuse PAR and reflected PAR. Soil water content and temperature are measured at six soil depths. Surface soil heat fluxes are also measured. A COSMOS Cosmic ray soil moisture instrument is installed, along with a logged piezometer, and nested piezometers installed with short screens for groundwater profile sampling. To monitor the watertable gradient, piezometers will be installed 500 m east and west of the tower.

Notes

Data Processing

File naming convention

The NetCDF files follow the naming convention below:

SiteName_ProcessingLevel_FromDate_ToDate_Type.nc
  • SiteName: short name of the site
  • ProcessingLevel: file processing level (L3, L4, L5, L6)
  • FromDate: temporal interval (start), YYYYMMDD
  • ToDate: temporal interval (end), YYYYMMDD
  • Type (Level 6 only): Summary, Monthly, Daily, Cumulative, Annual
For the NetCDF files at Level 6 (L6), there are several additional 'aggregated' files. For example:
  • Summary: This file is a summary of the L6 data for daily, monthly, annual and cumulative data. The files Monthly to Annual below are combined together in one file.
  • Monthly: This file shows L6 monthly averages of the respective variables, e.g. AH, Fc, NEE, etc.
  • Daily: same as Monthly but with daily averages.
  • Cumulative: File showing cumulative values for ecosystem respiration, evapo-transpiration, gross primary product, net ecosystem exchange and production as well as precipitation.
  • Annual: same as Monthly but with annual averages.

Lineage

All flux raw data is subject to the quality control process OzFlux QA/QC to generate data from L1 to L6. Levels 3 to 6 are available for re-use. Datasets contain Quality Controls flags which will indicate when data quality is poor and has been filled from alternative sources. For more details, refer to Isaac et al. (2017).

Progress Code: onGoing
Maintenance and Update Frequency: biannually

Notes

Credit
We at TERN acknowledge the Traditional Owners and Custodians throughout Australia, New Zealand and all nations. We honour their profound connections to land, water, biodiversity and culture and pay our respects to their Elders past, present and emerging.

Gingin Banksia Woodland Site is funded by TERN. It was established by CSIRO and is currently managed by Edith Cowan University (Centre for Ecosystem Management). The site is co-located with the Land Ecosystem Atmosphere Program (LEAP) – Gingin.
Gingin flux station is sited on land traditionally owned by the Yued group of the Noongar people.
Purpose
The purpose of Gingin flux station is to:
  • provide enhanced datasets of landscape-scale exchange of carbon dioxide, water vapour and energy along with ecophysiological characteristics and drivers in a semi-arid temperate ecosystems in Australia
  • monitor ecophysiological responses to long-term variation in climate and water table drawdown
  • further understand groundwater recharge under changing climate
  • provide ecophysiological and micrometeorological data representative of an important biome within Australia subject to drying climate, falling watertables, fire and encroachment of feral species
  • quantify landscape-scale exchange of carbon dioxide, water vapour and energy in a coastal heath environment.
Data Quality Information

Data Quality Assessment Scope
local : dataset
<br>Processing levels</br> <br>Under each of the data release directories, the netcdf files are organised by processing levels (L3, L4, L5 and L6):<ul style="list-style-type: disc;"> <li>L3 (Level 3) processing applies a range of quality assurance/quality control measures (QA/QC) to the L1 data. The variable names are mapped to the standard variable names (CF 1.8) as part of this step. The L3 netCDF file is then the starting point for all further processing stages.</li> <li>L4 (Level 4) processing fills gaps in the radiation, meteorological and soil quantities utilising AWS (automated weather station), ACCESS-G (Australian Community Climate and Earth-System Simulator) and ERA5 (the fifth generation ECMWF atmospheric reanalysis of the global climate).</li> <li>L5 (Level 5) processing fills gaps in the flux data employing the artificial neural network SOLO (self-organising linear output map).</li> <li>L6 (Level 6) processing partitions the gap-filled NEE into GPP and ER.</li></ul> Each processing level has two sub-folders ‘default’ and ‘site_pi’:<ul style="list-style-type: disc;"> <li>default: contains files processed using PyFluxPro</li> <li>site_pi: contains files processed by the principal investigators of the site.</li></ul> If the data quality is poor, the data is filled from alternative sources. Filled data can be identified by the Quality Controls flags in the dataset. Quality control checks include: <ul style="list-style-type: disc;"> <li>range checks for plausible limits</li> <li>spike detection</li> <li>dependency on other variables</li> <li>manual rejection of date ranges</li></ul> Specific checks applied to the sonic and IRGA data include rejection of points based on the sonic and IRGA diagnostic values and on either automatic gain control (AGC) or CO<sub>2</sub> and H<sub>2</sub>O signal strength, depending upon the configuration of the IRGA.</br>

Created: 2011-10-13

Issued: 2024-05-04

Modified: 2024-05-07

Data time period: 2011-10-13

This dataset is part of a larger collection

115.71377,-31.37635

115.71377,-31.376351

text: The Gingin flux station is located on the Swan Coastal Plain 70km north of Perth, Western Australia, and 2km south of the University of Western Australia International Gravity Wave Observatory.

Subjects
1 minute - < 1 hour | AIR TEMPERATURE | ATMOSPHERE | ATMOSPHERIC CARBON DIOXIDE | ATMOSPHERIC CHEMISTRY | ATMOSPHERIC PRESSURE | ATMOSPHERIC PRESSURE MEASUREMENTS | ATMOSPHERIC RADIATION | Atmospheric Sciences | ATMOSPHERIC TEMPERATURE | ATMOSPHERIC WATER VAPOR | AU-Gin | BIOGEOCHEMICAL PROCESSES | BIOSPHERE | Campbell Scientific 108 | Campbell Scientific CS616 | Campbell Scientific CS650 | Campbell Scientific CSAT3 | Campbell Scientific TCAV Averaging Soil Thermocouple Probe | Cubic Meter per Cubic Meter | Degree | EARTH SCIENCE | Earth Sciences | Ecological Applications | Environmental Science and Management | Environmental Sciences | EVAPOTRANSPIRATION | Ecosystem Function | Environmental Monitoring | GEOCHEMISTRY | Gill Windsonic4 | Gingin Flux Station | Gram per Cubic Meter | HEAT FLUX | HUMIDITY | HyQuest Solutions CS700 | INCOMING SOLAR RADIATION | Kilogram per Kilogram | Kilograms per metre per square second | Kilograms per square metre per second | Kilopascal | Kipp&Zonen CNR1 | LAND PRODUCTIVITY | LAND SURFACE | LAND USE/LAND COVER | LI-COR LI-7500 | LONGWAVE RADIATION | Meter | Meter per Second | Micromoles per mole | Micromoles per square metre second | Middleton CN3 | Millimetre | Millimoles per mole | Monin-Obukhov length (Meter) | PHOTOSYNTHETICALLY ACTIVE RADIATION | PRECIPITATION | PRECIPITATION AMOUNT | Percent | Point Resolution | SHORTWAVE RADIATION | SOIL MOISTURE/WATER CONTENT | Soil Sciences | SOIL TEMPERATURE | SOLID EARTH | SURFACE TEMPERATURE | Square metres per square second | TERRESTRIAL ECOSYSTEMS | TRACE GASES/TRACE SPECIES | TURBULENCE | Vaisala HMP155 | WIND DIRECTION | WIND SPEED | Watt per Square Meter | air temperature (degree Celsius) | banksia heath woodland | climatologyMeteorologyAtmosphere | decisiemens per metre | degree Celsius | downward heat flux at ground level in soil (Watt per Square Meter) | ecosystem respiration (Micromoles per square metre second) | gross primary productivity (Micromoles per square metre second) | lateral component of wind speed (Meter per Second) | longitudinal component of wind speed (Square metres per square second) | magnitude of surface downward stress (Kilograms per metre per square second) | mass concentration of water vapor in air (Gram per Cubic Meter) | mole fraction of carbon dioxide in air (Micromoles per mole) | mole fraction of water vapor in air (Millimoles per mole) | net ecosystem exchange (Micromoles per square metre second) | net ecosystem productivity (Micromoles per square metre second) | relative humidity (Percent) | soil electrical conductivity (decisiemens per metre) | soil temperature (degree Celsius) | specific humidity (Kilogram per Kilogram) | specific humidity saturation deficit in air (Kilogram per Kilogram) | surface air pressure (Kilopascal) | surface downwelling longwave flux in air (Watt per Square Meter) | surface downwelling shortwave flux in air (Watt per Square Meter) | surface friction velocity (Meter per Second) | surface net downward radiative flux (Watt per Square Meter) | surface upward flux of available energy (Watt per Square Meter) | surface upward latent heat flux (Watt per Square Meter) | surface upward mole flux of carbon dioxide (Micromoles per square metre second) | surface upward sensible heat flux (Watt per Square Meter) | surface upwelling longwave flux in air (Watt per Square Meter) | surface upwelling shortwave flux in air (Watt per Square Meter) | thickness of rainfall amount (Millimetre) | vertical wind (Meter per Second) | volume fraction of condensed water in soil (Cubic Meter per Cubic Meter) | water evapotranspiration flux (Kilograms per square metre per second) | water vapor partial pressure in air (Kilopascal) | water vapor saturation deficit in air (Kilopascal) | wind from direction (Degree) | wind speed (Meter per Second) |

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Other Information
Point-of-truth metadata URL

uri : https://geonetwork.tern.org.au/geonetwork/srv/eng/catalog.search#/metadata/2c4ca429-7e89-45a8-859e-6542bac2d7c0

Isaac P., Cleverly J., McHugh I., van Gorsel E., Ewenz C. and Beringer, J. (2017). OzFlux data: network integration from collection to curation, Biogeosciences, 14: 2903-2928

doi : https://doi.org/10.5194/bg-14-2903-2017

PyFluxPro

uri : https://github.com/OzFlux/PyFluxPro/wiki