Data

Genomic and occurrence datasets for comparative phylogeography of pygmy perches

Flinders University
Chris Brauer (Aggregated by) Dr Peter Unmack (Aggregated by) Luciano B. Beheregaray (Aggregated by) Michael Hammer (Aggregated by) Sean Buckley (Aggregated by)
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25451/flinders.18318602.v1&rft.title=Genomic and occurrence datasets for comparative phylogeography of pygmy perches&rft.identifier=https://doi.org/10.25451/flinders.18318602.v1&rft.publisher=Flinders University&rft.description=Datasets associated with Buckley et al. 2022 Variation in intraspecific demography drives localised concordance but species-wide discordance in responses to Plio-Pleistocene climatic change. BMC Ecology and Evolution.Both_species_SDM_occurrences.csv = occurrence data used for ensemble species distribution models for Nannoperca australis and Nannoperca obscura.SPP_species_concatenated.phy = concatenated alignment for 44 Nannoperca australis and Nannoperca vittata (phylogenetic outgroup) of 19,428 species-wide ddRAD loci.SPP_species_SNPs.str = genotypes for 44 Nannoperca australis and Nannoperca vittata (phylogenetic outgroup) at 17,389 'unlinked' (one per RAD locus) SNPs.SPP_pop_SNPs.zip = compressed folder of genotypes for 'unlinked' (one per RAD locus) individual population SNPs for 9 populations of Nannoperca australis.YPP_species_concatenated.phy = concatenated alignment for 33 Nannoperca obscura and Nannoperca vittata (phylogenetic outgroup) of 21,051 species-wide ddRAD loci.YPP_species_SNPs.str = genotypes for 33 Nannoperca obscura and Nannoperca vittata (phylogenetic outgroup) at 15,715 'unlinked' (one per RAD locus) SNPs.YPP_pop_SNPs.zip = compressed folder of genotypes for 'unlinked' (one per RAD locus) individual population SNPs for 5 populations of Nannoperca obscura.&rft.creator=Chris Brauer&rft.creator=Dr Peter Unmack&rft.creator=Luciano B. Beheregaray&rft.creator=Michael Hammer&rft.creator=Sean Buckley&rft.date=2022&rft_rights=REUSABLE-FOR-ANY-PURPOSE-(CC-BY)&rft_subject=genomics&rft_subject=phylogeography&rft_subject=freshwater&rft_subject=fish&rft_subject=ddRADseq&rft_subject=population genomics&rft_subject=Biogeography and Phylogeography&rft_subject=Genomics&rft_subject=Freshwater Ecology&rft_subject=Phylogeny and Comparative Analysis&rft_subject=Freshwater ecology&rft_subject=Biogeography and phylogeography&rft_subject=Phylogeny and comparative analysis&rft.type=dataset&rft.language=English Access the data
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Datasets associated with Buckley et al. 2022 "Variation in intraspecific demography drives localised concordance but species-wide discordance in responses to Plio-Pleistocene climatic change." BMC Ecology and Evolution.

Both_species_SDM_occurrences.csv = occurrence data used for ensemble species distribution models for Nannoperca australis and Nannoperca obscura.

SPP_species_concatenated.phy = concatenated alignment for 44 Nannoperca australis and Nannoperca vittata (phylogenetic outgroup) of 19,428 species-wide ddRAD loci.

SPP_species_SNPs.str = genotypes for 44 Nannoperca australis and Nannoperca vittata (phylogenetic outgroup) at 17,389 'unlinked' (one per RAD locus) SNPs.

SPP_pop_SNPs.zip = compressed folder of genotypes for 'unlinked' (one per RAD locus) individual population SNPs for 9 populations of Nannoperca australis.

YPP_species_concatenated.phy = concatenated alignment for 33 Nannoperca obscura and Nannoperca vittata (phylogenetic outgroup) of 21,051 species-wide ddRAD loci.

YPP_species_SNPs.str = genotypes for 33 Nannoperca obscura and Nannoperca vittata (phylogenetic outgroup) at 15,715 'unlinked' (one per RAD locus) SNPs.

YPP_pop_SNPs.zip = compressed folder of genotypes for 'unlinked' (one per RAD locus) individual population SNPs for 5 populations of Nannoperca obscura.

Issued: 2022-01-13

Created: 2022-01-13

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Subjects
Biogeography and Phylogeography | Biogeography and phylogeography | Freshwater Ecology | Freshwater ecology | Genomics | Phylogeny and Comparative Analysis | Phylogeny and comparative analysis | ddRADseq | fish | freshwater | genomics | phylogeography | population genomics |

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