Data

Genome assemblies and the associated annotations for seven Symbiodinium isolates

The University of Queensland
Associate Professor Cheong Xin Chan (Aggregated by) Associate Professor Cheong Xin Chan (Aggregated by) Emeritus Professor Mark Ragan (Aggregated by) Emeritus Professor Mark Ragan (Aggregated by) Mr Raul Gonzalez Pech (Aggregated by)
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.14264/f1b3a11&rft.title=Genome assemblies and the associated annotations for seven Symbiodinium isolates&rft.identifier=10.14264/f1b3a11&rft.publisher=The University of Queensland&rft.description=Assembled genomes and the associated annotation, predicted genes and predicted proteins for seven Symbiodinium isolates: Symbiodinium linucheae CCMP2456, Symbiodinium microadriaticum 04-503SCI.03, Symbiodinium microadriaticum CassKB8, Symbiodinium natans CCMP2548, Symbiodinium necroappetens CCMP2469, Symbiodinium pilosum CCMP2461, and Symbiodinium tridacnidorum CCMP2592. Each compressed file for an isolate contains (a) the assembled genome sequences (*.genome.fasta.gz), (b) the predicted protein-coding genes (*.CDS.fna.gz), (c) the predicted protein sequences (*.proteins.faa.gz), (d) the genome annotation (*.gff), (e) putative plastid genome sequences (plastid_*.fasta, except for CCMP2592), and (f) putative mitochondrial genome sequences (mitochondrial_*.fasta). No putative plastid genome sequences were recovered from the assembled genome of S. tridacnidorum CCMP2592. See README_txt.csv (view as flatfile) for more information.&rft.creator=Associate Professor Cheong Xin Chan&rft.creator=Associate Professor Cheong Xin Chan&rft.creator=Emeritus Professor Mark Ragan&rft.creator=Emeritus Professor Mark Ragan&rft.creator=Mr Raul Gonzalez Pech&rft.creator=Mr Raul Gonzalez Pech&rft.date=2021&rft_rights=2021, The University of Queensland&rft_rights= https://guides.library.uq.edu.au/deposit-your-data/license-reuse-data-agreement&rft_subject=eng&rft_subject=Symbiodinium&rft_subject=Symbiodiniaceae&rft_subject=dinoflagellate genomes&rft_subject=dinoflagellates&rft_subject=coral reef symbionts&rft_subject=Genomics&rft_subject=BIOLOGICAL SCIENCES&rft_subject=GENETICS&rft_subject=Bioinformatics&rft_subject=BIOCHEMISTRY AND CELL BIOLOGY&rft_subject=EVOLUTIONARY BIOLOGY&rft_subject=Microbial Genetics&rft_subject=MICROBIOLOGY&rft.type=dataset&rft.language=English Access the data
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c.chan1@uq.edu.au

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Assembled genomes and the associated annotation, predicted genes and predicted proteins for seven Symbiodinium isolates: Symbiodinium linucheae CCMP2456, Symbiodinium microadriaticum 04-503SCI.03, Symbiodinium microadriaticum CassKB8, Symbiodinium natans CCMP2548, Symbiodinium necroappetens CCMP2469, Symbiodinium pilosum CCMP2461, and Symbiodinium tridacnidorum CCMP2592. Each compressed file for an isolate contains (a) the assembled genome sequences (*.genome.fasta.gz), (b) the predicted protein-coding genes (*.CDS.fna.gz), (c) the predicted protein sequences (*.proteins.faa.gz), (d) the genome annotation (*.gff), (e) putative plastid genome sequences (plastid_*.fasta, except for CCMP2592), and (f) putative mitochondrial genome sequences (mitochondrial_*.fasta). No putative plastid genome sequences were recovered from the assembled genome of S. tridacnidorum CCMP2592. See README_txt.csv (view as flatfile) for more information.

Issued: 2021

Data time period: 2016 to 02 2021

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Subjects
Biochemistry and Cell Biology | Biological Sciences | Bioinformatics | Evolutionary Biology | Genetics | Genomics | Microbiology | Microbial Genetics | Symbiodiniaceae | Symbiodinium | coral reef symbionts | dinoflagellate genomes | dinoflagellates | eng |

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Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium

local : UQ:f5205ff

Gonzalez-Pech, Raul A., Stephens, Timothy G., Chen, Yibi, Mohamed, Amin R., Cheng, Yuanyuan, Shah, Sarah, Dougan, Katherine E., Fortuin, Michael D. A., Lagorce, Remi, Burt, David W., Bhattacharya, Debashish, Ragan, Mark A. and Chan, Cheong Xin (2021). Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium. BMC Biology, 19 (1) 73, 73. doi: 10.1186/s12915-021-00994-6

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local : UQ:289097

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