Data

Field pea Ascochyta blight resistance: Germplasm screening, population development, DArTseq genotypes and resistance locus mapping

Curtin University
Robert Lee (Principal investigator) Christina Grime (Associated with) Hediyeh Tahghighi (Associated with) Kane O'Driscoll (Associated with) Lars Kamphuis (Associated with)
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25917/0xwd-re31&rft.title=Field pea Ascochyta blight resistance: Germplasm screening, population development, DArTseq genotypes and resistance locus mapping&rft.identifier=10.25917/0xwd-re31&rft.publisher=Curtin University&rft.description=Supplementary Material available at 10.1094/PHYTO-02-22-0051-R FigureS1.svg Detailed marker map in scalable vector graphics format, of SNP and SilicoDArT markers mapped to chromosomes 1 to 7 of the P. sativum genome assembly. FigureS2.docx Disease screening results for F4:5 PsGERMANY x PBA Gunyah and PBA Oura, recombinant inbred lines. FigureS3.docx Disease screening results for F3:4 K-3140 x PBA Gunyah and PBA Oura, recombinant inbred lines. FigureS4.docx Disease screening results for F4:5 PIS417 x PBA Gunyah and PBA Oura, recombinant inbred lines. TableS1.xlsx P. pinodes disease scores normalised to cv. Kaspa for Pisum spp. germplasm and AGG metadata. TableS2.xlsx A. koolunga disease scores normalised to cv. Kaspa for Pisum spp. germplasm and AGG metadata. TableS3.xlsx Field pea recombinant inbred lines genotyping data – Diversity Arrays Technology SNP markers. TableS4.xlsx Field pea recombinant inbred lines genotyping data – Diversity Arrays Technology SilicoDArT markers. TableS5.xlsx Trait-associated marker details for P. pinodes and A. koolunga disease resistance. TableS6.xlsx Annotated genes from P. sativum gene annotation release v1a at Jbrowse (Kreplak et al. 2019), for disease response-associated regions on chromosomes 2 and 5 for P. pinodes and A. koolunga, respectively.Field pea (mostly Pisum sativum) accessions were screened with ascochyta blight species Peyronellaea pinodes and Ascochyta koolunga. 513 accessions were screened with both species. Selected accessions were crossed to PBA Gunyah and PBA Oura and resulting RIL populations were further tested with Ascochyta Blight species and genotyped using the DArTseq method. Trait associated loci were determined in a GWAS analysis. The work has been published and supplementary data attached to the paper.&rft.creator=Robert Lee&rft.date=2024&rft_rights=&rft_subject=Ascochyta&rft_subject=blackspot&rft_subject=fungal disease&rft_subject=necrotroph&rft_subject=Peyronellaea pinodes&rft_subject=Phoma koolunga&rft_subject=Plant pathology&rft_subject=Plant biology&rft_subject=BIOLOGICAL SCIENCES&rft.type=dataset&rft.language=English Access the data

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Brief description

Field pea (mostly Pisum sativum) accessions were screened with ascochyta blight species Peyronellaea pinodes and Ascochyta koolunga. 513 accessions were screened with both species. Selected accessions were crossed to PBA Gunyah and PBA Oura and resulting RIL populations were further tested with Ascochyta Blight species and genotyped using the DArTseq method. Trait associated loci were determined in a GWAS analysis. The work has been published and supplementary data attached to the paper.

Full description

Supplementary Material available at 10.1094/PHYTO-02-22-0051-R FigureS1.svg Detailed marker map in scalable vector graphics format, of SNP and SilicoDArT markers mapped to chromosomes 1 to 7 of the P. sativum genome assembly. FigureS2.docx Disease screening results for F4:5 PsGERMANY x PBA Gunyah and PBA Oura, recombinant inbred lines. FigureS3.docx Disease screening results for F3:4 K-3140 x PBA Gunyah and PBA Oura, recombinant inbred lines. FigureS4.docx Disease screening results for F4:5 PIS417 x PBA Gunyah and PBA Oura, recombinant inbred lines. TableS1.xlsx P. pinodes disease scores normalised to cv. Kaspa for Pisum spp. germplasm and AGG metadata. TableS2.xlsx A. koolunga disease scores normalised to cv. Kaspa for Pisum spp. germplasm and AGG metadata. TableS3.xlsx Field pea recombinant inbred lines genotyping data – Diversity Arrays Technology SNP markers. TableS4.xlsx Field pea recombinant inbred lines genotyping data – Diversity Arrays Technology SilicoDArT markers. TableS5.xlsx Trait-associated marker details for P. pinodes and A. koolunga disease resistance. TableS6.xlsx Annotated genes from P. sativum gene annotation release v1a at Jbrowse (Kreplak et al. 2019), for disease response-associated regions on chromosomes 2 and 5 for P. pinodes and A. koolunga, respectively.

Issued: 2022

Data time period: 2015 to 2017

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