Data

Data for supermatrix phylogeny of the Senecioneae

Commonwealth Scientific and Industrial Research Organisation
Schmidt-Lebuhn, Alexander ; Zeil-Rolfe, Isabel ; Lepschi, Brendan ; Gooden, Ben
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25919/5dc879ea58a19&rft.title=Data for supermatrix phylogeny of the Senecioneae&rft.identifier=https://doi.org/10.25919/5dc879ea58a19&rft.publisher=Commonwealth Scientific and Industrial Research Organisation&rft.description=DNA sequence data alignments, partitioning information and resulting phylogenetic trees for study of evolutionary relationships of the groundsel tribe (Senecioneae) of the daisy family (Asteraceae).\nLineage: Most sequence data were obtained from Genbank. Additional ETS psbA-trnH, and trnL-trnF sequences were produced for 32 previously unexamined native Australian species using Sanger sequencing. Alignments were produced using MAFFT 7.310 under automatic algorithm selection and subsequently examined, manually corrected and cropped in AliView 1.22. Phylogenetic trees were inferred using IQ-TREE 1.4.4 under automatic partition finding using sequence regions as starting partitions, automatic model selection for each partition, and with 1,000 UltraFast Bootstrap samples as branch support.&rft.creator=Schmidt-Lebuhn, Alexander &rft.creator=Zeil-Rolfe, Isabel &rft.creator=Lepschi, Brendan &rft.creator=Gooden, Ben &rft.date=2020&rft.edition=v3&rft_rights=CSIRO Data Licence https://research.csiro.au/dap/licences/csiro-data-licence/&rft_rights=Data is accessible online and may be reused in accordance with licence conditions&rft_rights=All Rights (including copyright) CSIRO 2019.&rft_subject=Arrhenechthites&rft_subject=Lordhowea&rft_subject=phylogeny&rft_subject=Senecio&rft_subject=Senecioneae&rft_subject=Plant and fungus systematics and taxonomy&rft_subject=Evolutionary biology&rft_subject=BIOLOGICAL SCIENCES&rft.type=dataset&rft.language=English Access the data
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Data is accessible online and may be reused in accordance with licence conditions

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Brief description

DNA sequence data alignments, partitioning information and resulting phylogenetic trees for study of evolutionary relationships of the groundsel tribe (Senecioneae) of the daisy family (Asteraceae).
Lineage: Most sequence data were obtained from Genbank. Additional ETS psbA-trnH, and trnL-trnF sequences were produced for 32 previously unexamined native Australian species using Sanger sequencing. Alignments were produced using MAFFT 7.310 under automatic algorithm selection and subsequently examined, manually corrected and cropped in AliView 1.22. Phylogenetic trees were inferred using IQ-TREE 1.4.4 under automatic partition finding using sequence regions as starting partitions, automatic model selection for each partition, and with 1,000 UltraFast Bootstrap samples as branch support.

Available: 2020-05-31

Data time period: 2018-07-01 to 2019-03-31

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Subjects
Arrhenechthites | Biological Sciences | Evolutionary Biology | Lordhowea | Plant and Fungus Systematics and Taxonomy | Senecio | Senecioneae | phylogeny |

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