Data

Coral-seeding devices with fish-exclusion features reduce mortality on the Great Barrier Reef

Australian Institute of Marine Science
Australian Institute of Marine Science (AIMS)
Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]
ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=https://apps.aims.gov.au/metadata/view/7e4d3f91-a85f-47e1-802c-09b506f21fe5&rft.title=Coral-seeding devices with fish-exclusion features reduce mortality on the Great Barrier Reef&rft.identifier=https://apps.aims.gov.au/metadata/view/7e4d3f91-a85f-47e1-802c-09b506f21fe5&rft.publisher=Australian Institute of Marine Science (AIMS)&rft.description=In an 8-month field study, we assessed the efficacy of coral-seeding devices with refugia from fishes (i.e., ‘fish-exclusion’ features) to limit predation-driven mortality of Acropora digitifera spat and microfragments.Mature gravid Acorpora digitifera (Dana 1846) colonies were collected from Davies Reef (central mid shelf Great Barrier Reef) ahead of Autumn coral spawning (February to March) in 2021. The corals were transported back to the Australian Institute of Marine Science National Sea Simulator (SeaSim) facility and kept in temperature controlled outdoor aquaria. Egg-sperm bundles were collected during spawning from 3-13 colonies and cross-fertilized. The coral larvae were settled onto conditioned, aragonite coral “frag plugs” (Ocean Wonders) after 7 days. The plugs contained a mixed community of crustose coralline algae and bacteria biofilms that are known to induce settlement of Acorpora corals; these were conditioned in aquaria for 2-months prior to settlement. Five broodstock colonies were selected for microfragmentation 3-months after spawning. Colonies were chiseled into fragments (~10 cm length), then cut into many microfragments (8 mm2). Coral spat and microfragments were held in aquaria until deployment; time in aquaria was equivalent to 4 months for spat and 1 month for microfragments.Three devices with nominally different levels of grazing exclusion and coral protection were selected for this experiment: (1) a featureless device (open to grazing); (2) a caged featureless device (complete exclusion of grazing); and (3) a device with engineered fish-exclusion features (protection from grazing and our device of interest). The experimental device was designed at AIMS as a part of the Reef Restoration and Adaptation Program (RRAP) and represents the first design of ceramic devices to support field deployment of juvenile corals grown on standard 20-mm (Ø) coral plugs.Devices with corals were then deployed at Davies Reef onto 4 replicate sites in August 2021. Sites were selected based on their leeward location, shallow depth (< 3 m at high tide), and preexisting population of A. digitifera corals. Devices were surveyed over 3 time points (2, 90, and 240 days) post deployment. Data collection included assessments of coral survival, fish abundance, fish grazing, benthic composition, sedimentation, and wave energy, at the 4 sites. All experimental materials were removed from the reef after 8 months. Coral survival and grazing data were analysed using generalized linear mixed effect models (GLMMs) in R statistical software. Redundancy analyses and linear regression models were also used to explore the effects of ecological variables on survival and grazing. Zero-inflated GLMMs were used to compare fish abundance and feeding across sites.Maintenance and Update Frequency: notPlannedStatement: Survival and grazing data were evaluated through image analysis and the manual identification and counting of individual corals or fish bites on plugs of each device. Fish abundance was observed by divers during stationary point count surveys. GoPro video footage was used to obtain fish feeding and grazing information in 0.25 m2 quadrats around devices. Fish bites were manually counted during video analysis. 0.25 m2 quadrats were used to identify and estimate the cover of benthic community constituents growing near devices. Quadrats were imaged and analysed manually using the Reef Cloud online data base (https://reefcloud.ai/). Clod cards were used to compare relative water flow among sites. Water flow data was expressed as dissolution over time and using the Diffusion Factor (Jokiel and Morrissey 1993). ‘SedPods’ and ‘TurfPods’ were used as sediment collection devices (Field et al 2013). Sediment processing followed standard water and wastewater methods from the American Public Health Association 2018. The files include data from all timepoints that were used in the analyses. Missing and disturbed devices were not included in the data. All data were quality checked after entry.&rft.creator=Australian Institute of Marine Science (AIMS) &rft.date=2026&rft.coverage=westlimit=147.627017; southlimit=-18.826097; eastlimit=147.627017; northlimit=-18.826097&rft.coverage=westlimit=147.627017; southlimit=-18.826097; eastlimit=147.627017; northlimit=-18.826097&rft.coverage=westlimit=147.630633; southlimit=-18.8206; eastlimit=147.630633; northlimit=-18.8206&rft.coverage=westlimit=147.630633; southlimit=-18.8206; eastlimit=147.630633; northlimit=-18.8206&rft.coverage=westlimit=147.631233; southlimit=-18.819533; eastlimit=147.631233; northlimit=-18.819533&rft.coverage=westlimit=147.631233; southlimit=-18.819533; eastlimit=147.631233; northlimit=-18.819533&rft.coverage=westlimit=147.632533; southlimit=-18.8181; eastlimit=147.632533; northlimit=-18.8181&rft.coverage=westlimit=147.632533; southlimit=-18.8181; eastlimit=147.632533; northlimit=-18.8181&rft_rights=Creative Commons Attribution 3.0 Australia License http://creativecommons.org/licenses/by/3.0/au/&rft_rights=Use Limitation: All AIMS data, products and services are provided as is and AIMS does not warrant their fitness for a particular purpose or non-infringement. While AIMS has made every reasonable effort to ensure high quality of the data, products and services, to the extent permitted by law the data, products and services are provided without any warranties of any kind, either expressed or implied, including without limitation any implied warranties of title, merchantability, and fitness for a particular purpose or non-infringement. AIMS make no representation or warranty that the data, products and services are accurate, complete, reliable or current. To the extent permitted by law, AIMS exclude all liability to any person arising directly or indirectly from the use of the data, products and services.&rft_rights=Attribution: Format for citation of metadata sourced from Australian Institute of Marine Science (AIMS) in a list of reference is as follows: Australian Institute of Marine Science (AIMS). (2024). Coral-seeding devices with fish-exclusion features reduce mortality on the Great Barrier Reef. https://apps.aims.gov.au/metadata/view/7e4d3f91-a85f-47e1-802c-09b506f21fe5, accessed[date-of-access].&rft_subject=oceans&rft.type=dataset&rft.language=English Access the data

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Creative Commons Attribution 3.0 Australia License
http://creativecommons.org/licenses/by/3.0/au/

Use Limitation: All AIMS data, products and services are provided "as is" and AIMS does not warrant their fitness for a particular purpose or non-infringement. While AIMS has made every reasonable effort to ensure high quality of the data, products and services, to the extent permitted by law the data, products and services are provided without any warranties of any kind, either expressed or implied, including without limitation any implied warranties of title, merchantability, and fitness for a particular purpose or non-infringement. AIMS make no representation or warranty that the data, products and services are accurate, complete, reliable or current. To the extent permitted by law, AIMS exclude all liability to any person arising directly or indirectly from the use of the data, products and services.

Attribution: Format for citation of metadata sourced from Australian Institute of Marine Science (AIMS) in a list of reference is as follows: "Australian Institute of Marine Science (AIMS). (2024). Coral-seeding devices with fish-exclusion features reduce mortality on the Great Barrier Reef. https://apps.aims.gov.au/metadata/view/7e4d3f91-a85f-47e1-802c-09b506f21fe5, accessed[date-of-access]".

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Full description

In an 8-month field study, we assessed the efficacy of coral-seeding devices with refugia from fishes (i.e., ‘fish-exclusion’ features) to limit predation-driven mortality of Acropora digitifera spat and microfragments.


Mature gravid Acorpora digitifera (Dana 1846) colonies were collected from Davies Reef (central mid shelf Great Barrier Reef) ahead of Autumn coral spawning (February to March) in 2021. The corals were transported back to the Australian Institute of Marine Science National Sea Simulator (SeaSim) facility and kept in temperature controlled outdoor aquaria. Egg-sperm bundles were collected during spawning from 3-13 colonies and cross-fertilized. The coral larvae were settled onto conditioned, aragonite coral “frag plugs” (Ocean Wonders) after 7 days. The plugs contained a mixed community of crustose coralline algae and bacteria biofilms that are known to induce settlement of Acorpora corals; these were conditioned in aquaria for 2-months prior to settlement. Five broodstock colonies were selected for microfragmentation 3-months after spawning. Colonies were chiseled into fragments (~10 cm length), then cut into many microfragments (8 mm2). Coral spat and microfragments were held in aquaria until deployment; time in aquaria was equivalent to 4 months for spat and 1 month for microfragments.


Three devices with nominally different levels of grazing exclusion and coral protection were selected for this experiment: (1) a featureless device (open to grazing); (2) a caged featureless device (complete exclusion of grazing); and (3) a device with engineered fish-exclusion features (protection from grazing and our device of interest). The experimental device was designed at AIMS as a part of the Reef Restoration and Adaptation Program (RRAP) and represents the first design of ceramic devices to support field deployment of juvenile corals grown on standard 20-mm (Ø) coral plugs.


Devices with corals were then deployed at Davies Reef onto 4 replicate sites in August 2021. Sites were selected based on their leeward location, shallow depth (< 3 m at high tide), and preexisting population of A. digitifera corals. Devices were surveyed over 3 time points (2, 90, and 240 days) post deployment. Data collection included assessments of coral survival, fish abundance, fish grazing, benthic composition, sedimentation, and wave energy, at the 4 sites. All experimental materials were removed from the reef after 8 months.


Coral survival and grazing data were analysed using generalized linear mixed effect models (GLMMs) in R statistical software. Redundancy analyses and linear regression models were also used to explore the effects of ecological variables on survival and grazing. Zero-inflated GLMMs were used to compare fish abundance and feeding across sites.

Lineage

Maintenance and Update Frequency: notPlanned
Statement: Survival and grazing data were evaluated through image analysis and the manual identification and counting of individual corals or fish bites on plugs of each device. Fish abundance was observed by divers during stationary point count surveys. GoPro video footage was used to obtain fish feeding and grazing information in 0.25 m2 quadrats around devices. Fish bites were manually counted during video analysis. 0.25 m2 quadrats were used to identify and estimate the cover of benthic community constituents growing near devices. Quadrats were imaged and analysed manually using the Reef Cloud online data base (https://reefcloud.ai/). Clod cards were used to compare relative water flow among sites. Water flow data was expressed as dissolution over time and using the Diffusion Factor (Jokiel and Morrissey 1993). ‘SedPods’ and ‘TurfPods’ were used as sediment collection devices (Field et al 2013). Sediment processing followed standard water and wastewater methods from the American Public Health Association 2018. The files include data from all timepoints that were used in the analyses. Missing and disturbed devices were not included in the data. All data were quality checked after entry.

Notes

Credit
Negri A
Credit
Hoogenboom M
Credit
James Cook University (JCU), Australia
Credit
AIMS@JCU, Australia
Credit
Randall C

Modified: 18 09 2026

This dataset is part of a larger collection

Click to explore relationships graph

147.62702,-18.8261

147.627017,-18.826097

147.63063,-18.8206

147.630633,-18.8206

147.63123,-18.81953

147.631233,-18.819533

147.63253,-18.8181

147.632533,-18.8181

text: westlimit=147.627017; southlimit=-18.826097; eastlimit=147.627017; northlimit=-18.826097

text: westlimit=147.630633; southlimit=-18.8206; eastlimit=147.630633; northlimit=-18.8206

text: westlimit=147.631233; southlimit=-18.819533; eastlimit=147.631233; northlimit=-18.819533

text: westlimit=147.632533; southlimit=-18.8181; eastlimit=147.632533; northlimit=-18.8181

Subjects
oceans |

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Identifiers
  • global : 7e4d3f91-a85f-47e1-802c-09b506f21fe5
ACN 633 798 857