Data

Chickpea Gbrowse

The University of Queensland
Associate Professor Dave Edwards (Aggregated by) Dr Kenneth Chan (Aggregated by)
Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]
ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.14264/uql.2017.95&rft.title=Chickpea Gbrowse&rft.identifier=10.14264/uql.2017.95&rft.publisher=The University of Queensland&rft.description=The Chickpea genome contains 8 Chromosomes with ~740 million bases pairs (Mbp) and 28,269 genes. It is a challenge to visualise and explore such a huge quantity of data, especially for non-bioinformatics researchers. We are part of the Chickpea Consortium and we published the Chickpea genome in Nature Biotechnology in early 2014. Currently, only the raw data of the Chickpea genome can be downloaded in NCBI, thus limiting the analysis to researchers with strong computing skills. Setting up a well-featured genome browser for the Chickpea genome is important for the plant research community, and especially beneficial to the Chickpea research community. The Chickpea browsing system will be the first Chickpea genome browser, and will attract the Chickpea research community to use it. Additionally, it will also benefit the plant research community, especially for genome comparative study. Both the Kabuli and Desi genomes can be downloaded in full as well as being searchable through Gbrowse.&rft.creator=Associate Professor Dave Edwards&rft.creator=Dr Kenneth Chan&rft.date=2014&rft_rights=2014, The University of Queensland&rft_rights= https://guides.library.uq.edu.au/deposit-your-data/license-reuse-data-agreement&rft_subject=eng&rft_subject=Chickpea&rft_subject=Genomic analyses&rft_subject=Plant biology&rft_subject=Genome Structure and Regulation&rft_subject=BIOLOGICAL SCIENCES&rft_subject=GENETICS&rft_subject=PLANT BIOLOGY&rft_subject=Bioinformatics&rft_subject=BIOCHEMISTRY AND CELL BIOLOGY&rft.type=dataset&rft.language=English Access the data
Cite Saved to MyRDA Save to MyRDA

Licence & Rights:

Other view details

Access:

Open

Contact Information

[email protected]

Full description

The Chickpea genome contains 8 Chromosomes with ~740 million bases pairs (Mbp) and 28,269 genes. It is a challenge to visualise and explore such a huge quantity of data, especially for non-bioinformatics researchers. We are part of the Chickpea Consortium and we published the Chickpea genome in Nature Biotechnology in early 2014. Currently, only the raw data of the Chickpea genome can be downloaded in NCBI, thus limiting the analysis to researchers with strong computing skills. Setting up a well-featured genome browser for the Chickpea genome is important for the plant research community, and especially beneficial to the Chickpea research community. The Chickpea browsing system will be the first Chickpea genome browser, and will attract the Chickpea research community to use it. Additionally, it will also benefit the plant research community, especially for genome comparative study. Both the Kabuli and Desi genomes can be downloaded in full as well as being searchable through Gbrowse.

Issued: 2014

This dataset is part of a larger collection

Click to explore relationships graph
Help

Related Data

Related People

Related Grants and Projects

Related Websites

Subjects
Biochemistry and Cell Biology | Biological Sciences | Bioinformatics | Chickpea | Genetics | Genome Structure and Regulation | Genomic analyses | Plant Biology | Plant biology | eng |

User Contributed Tags    

Login to tag this record with meaningful keywords to make it easier to discover

Other Information
Identifiers
ACN 633 798 857