Data

Blast Formatted Next Generation Sequence Data for TAGdb

The University of Queensland
Associate Professor Dave Edwards (Aggregated by)
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.48610/22fe37b&rft.title=Blast Formatted Next Generation Sequence Data for TAGdb&rft.identifier=10.48610/22fe37b&rft.publisher=The University of Queensland&rft.description=The TAGdb is an online database enabling researchers to identify paired read sequences that share identity with a submitted query sequence. These tags can be used to design oligonucleotide primers for the PCR amplification of the region in the target genome. This tool is applicable for gene and promoter discovery in a wide range of species and greatly facilitates comparative genomics and molecular marker discovery in orphan crops or those with large and complex genomes.The collection includes Barley, Brassica, Diplotaxis, Hirschfeldia, Lotus, Nicotiana, Pongamia, Rye, Sinapis, Teraselmis and Wheat NGS data.&rft.creator=Associate Professor Dave Edwards&rft.date=2015&rft_rights=2022, The University of Queensland&rft_rights= http://guides.library.uq.edu.au/deposit_your_data/terms_and_conditions&rft_subject=eng&rft_subject=Barley&rft_subject=Brassica&rft_subject=Diplotaxis&rft_subject=Hirschfeldia&rft_subject=Lotus&rft_subject=Nicotiana&rft_subject=Pongamia&rft_subject=Sinapsis&rft_subject=Rye&rft_subject=Teraselmis&rft_subject=Wheat&rft_subject=Triticum spp.&rft_subject=next generation sequencing&rft_subject=Bioinformatics&rft_subject=BIOLOGICAL SCIENCES&rft_subject=BIOCHEMISTRY AND CELL BIOLOGY&rft_subject=Genome Structure and Regulation&rft_subject=GENETICS&rft_subject=PLANT BIOLOGY&rft.type=dataset&rft.language=English Access the data
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The TAGdb is an online database enabling researchers to identify paired read sequences that share identity with a submitted query sequence. These tags can be used to design oligonucleotide primers for the PCR amplification of the region in the target genome. This tool is applicable for gene and promoter discovery in a wide range of species and greatly facilitates comparative genomics and molecular marker discovery in orphan crops or those with large and complex genomes.The collection includes Barley, Brassica, Diplotaxis, Hirschfeldia, Lotus, Nicotiana, Pongamia, Rye, Sinapis, Teraselmis and Wheat NGS data.

Issued: 2015

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Subjects
Biochemistry and Cell Biology | Biological Sciences | Barley | Bioinformatics | Brassica | Diplotaxis | Genetics | Genome Structure and Regulation | Hirschfeldia | Lotus | Nicotiana | Plant Biology | Pongamia | Rye | Sinapsis | Teraselmis | Triticum spp. | Wheat | eng | next generation sequencing |

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Other Information
Targeted identification of genomic regions using TAGdb

local : UQ:227949

Marshall, Daniel J., Hayward, Alice, Eales, Dominic, Imelfort, Michael, Stiller, Jiri, Berkman, Paul J., Clark, Terry, McKenzie, Megan, Lai, Kaitao, Duran, Chris, Batley, Jacqueline and Edwards, David (2010). Targeted identification of genomic regions using TAGdb. Plant Methods, 6 (19) 19, 1-6. doi: 10.1186/1746-4811-6-19

Research Computing Centre (RCC) Datasets

local : UQ:5d1d4fb

Research Data Collections

local : UQ:289097

School of Agriculture and Food Sustainability

local : UQ:240731

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