Data

Bioinformatic Pipeline Scripts Amplicon Sequencing - Grey Box Grassy Woodlands

Flinders University
Nicole Fickling (Aggregated by)
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25451/flinders.29848280.v1&rft.title=Bioinformatic Pipeline Scripts Amplicon Sequencing - Grey Box Grassy Woodlands&rft.identifier=https://doi.org/10.25451/flinders.29848280.v1&rft.publisher=Flinders University&rft.description=Bioinformatic scripts for the paper titled Habitat fragmentation shifts soil microbial composition but not richness. Scripts outline the bioinformatic pipeline using DADA2 and QIIME2 to create amplicon sequence variant tables from .fastq files.The .fastq files and sequence metadata are available on the Sequence Read Archive under project number: PRJNA1298480&rft.creator=Nicole Fickling&rft.date=2025&rft_rights=NON-COMMERCIAL-REUSE-ONLY-(CC-BY-NC)&rft_subject=bioinformatics&rft_subject=soil microbiota&rft_subject=soil&rft_subject=microbial community&rft_subject=bacteria&rft_subject=Soil biology&rft.type=dataset&rft.language=English Access the data
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Bioinformatic scripts for the paper titled "Habitat fragmentation shifts soil microbial composition but not richness". Scripts outline the bioinformatic pipeline using DADA2 and QIIME2 to create amplicon sequence variant tables from .fastq files.

The .fastq files and sequence metadata are available on the Sequence Read Archive under project number: PRJNA1298480

Issued: 2025-08-08

Created: 2025-08-08

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Subjects
Soil biology | bacteria | bioinformatics | microbial community | soil | soil microbiota |

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