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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=https://mytardis.its.monash.edu.au/experiment/view/772&rft.title=The X-ray Crystal Structure of Full-length Human Plasminogen&rft.identifier=experiment/view/772&rft.publisher=Monash University&rft.description= Plasminogen is the proenzyme precursor of the primary fibrinolytic protease plasmin. Circulating plasminogen, which comprises a Pan-apple (PAp) domain, five kringle domains (KR1-5), and a serine protease (SP) domain, adopts a closed, activation-resistant conformation. The kringle domains mediate interactions with fibrin clots and cell-surface receptors. These interactions trigger plasminogen to adopt an open form that can be cleaved and converted to plasmin by tissue-type and urokinase-type plasminogen activators. Here, the structure of closed plasminogen reveals that the PAp and SP domains, together with chloride ions, maintain the closed conformation through interactions with the kringle array. Differences in glycosylation alter the position of KR3, although in all structures the loop cleaved by plasminogen activators is inaccessible. The ligand-binding site of KR1 is exposed and likely governs proenzyme recruitment to targets. Furthermore, analysis of our structure suggests that KR5 peeling away from the PAp domain may initiate plasminogen conformational change. This entry contains two diffraction datasets: G1-10 Glycoform 1 Humanplasminogen (PDB ID: 4DUU) Xtal19 Glycoform2 Humanplasminogen (PDB ID: 4DUR) Publication in Cell Reports 1(3) 185-190 &rft.creator=Dr Paul Coughlin&rft.creator=Prof Ian Smith&rft.creator=Prof James Whisstock&rft.date=2012&rft_subject=BIOCHEMISTRY AND CELL BIOLOGY&rft_subject=BIOLOGICAL SCIENCES&rft_subject=MEDICAL BIOCHEMISTRY AND METABOLOMICS&rft_subject=MEDICAL AND HEALTH SCIENCES&rft_subject=Macromolecular Crystallography&rft_subject=Diffraction&rft_subject=Protein Structure&rft_subject=X-Ray&rft_subject=Synchrotron&rft.type=dataset&rft.language=English Access the data

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Brief description

Plasminogen is the proenzyme precursor of the primary fibrinolytic protease plasmin. Circulating plasminogen, which comprises a Pan-apple (PAp) domain, five kringle domains (KR1-5), and a serine protease (SP) domain, adopts a closed, activation-resistant conformation. The kringle domains mediate interactions with fibrin clots and cell-surface receptors. These interactions trigger plasminogen to adopt an open form that can be cleaved and converted to plasmin by tissue-type and urokinase-type plasminogen activators. Here, the structure of closed plasminogen reveals that the PAp and SP domains, together with chloride ions, maintain the closed conformation through interactions with the kringle array. Differences in glycosylation alter the position of KR3, although in all structures the loop cleaved by plasminogen activators is inaccessible. The ligand-binding site of KR1 is exposed and likely governs proenzyme recruitment to targets. Furthermore, analysis of our structure suggests that KR5 peeling away from the PAp domain may initiate plasminogen conformational change.

This entry contains two diffraction datasets:

  • G1-10 Glycoform 1 Humanplasminogen (PDB ID: 4DUU)
  • Xtal19 Glycoform2 Humanplasminogen (PDB ID: 4DUR)

Publication in Cell Reports 1(3) 185-190

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  • Local : experiment/view/772