Data

Vavilov Diversity Wheat Panel iSelect 90K SNP Genotypes

Commonwealth Scientific and Industrial Research Organisation
Barrero Sanchez, Jose
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25919/7424-8409&rft.title=Vavilov Diversity Wheat Panel iSelect 90K SNP Genotypes&rft.identifier=https://doi.org/10.25919/7424-8409&rft.publisher=Commonwealth Scientific and Industrial Research Organisation&rft.description=Genotypes from a 273 subset of spring or semi-winter varieties from an established global wheat diversity set, the Vavilov wheat diversity panel. Single nucleotide polymorphism (SNP) data were captured using the Illumina iSelect 90K SNP array. SNP data were filtered on minor allele frequency > 3.5% and missing data < 30%, resulting in 26519 polymorphic SNPs for downstream analysis. This data set was published as supplementary material for the article Evaluation of the impact of heat on wheat dormancy, late maturity alpha-amylase and grain size under control environmental conditions”, in Scientific Reports 2020.\nLineage: DNA from the different genotypes was extracted at CSIRO Ag and Food (ACT) and the genotyping was performed at Agribio (Victoria).&rft.creator=Barrero Sanchez, Jose &rft.date=2021&rft.edition=v2&rft_rights=Creative Commons Attribution 4.0 International Licence https://creativecommons.org/licenses/by/4.0/&rft_rights=Data is accessible online and may be reused in accordance with licence conditions&rft_rights=All Rights (including copyright) CSIRO 2020.&rft_subject=wheat&rft_subject=SNP&rft_subject=Vavilov&rft_subject=diversity&rft_subject=array&rft_subject=90K&rft_subject=Agricultural biotechnology not elsewhere classified&rft_subject=Agricultural biotechnology&rft_subject=AGRICULTURAL, VETERINARY AND FOOD SCIENCES&rft_subject=Plant and fungus systematics and taxonomy&rft_subject=Evolutionary biology&rft_subject=BIOLOGICAL SCIENCES&rft_subject=Genetics not elsewhere classified&rft_subject=Genetics&rft_subject=Plant cell and molecular biology&rft_subject=Plant biology&rft_subject=Plant biology not elsewhere classified&rft.type=dataset&rft.language=English Access the data
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Creative Commons Attribution 4.0 International Licence
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Data is accessible online and may be reused in accordance with licence conditions

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Genotypes from a 273 subset of spring or semi-winter varieties from an established global wheat diversity set, the Vavilov wheat diversity panel. Single nucleotide polymorphism (SNP) data were captured using the Illumina iSelect 90K SNP array. SNP data were filtered on minor allele frequency > 3.5% and missing data < 30%, resulting in 26519 polymorphic SNPs for downstream analysis. This data set was published as supplementary material for the article "Evaluation of the impact of heat on wheat dormancy, late maturity alpha-amylase and grain size under control environmental conditions”, in Scientific Reports 2020.
Lineage: DNA from the different genotypes was extracted at CSIRO Ag and Food (ACT) and the genotyping was performed at Agribio (Victoria).

Available: 2021-09-30

Subjects
90K | Agricultural, Veterinary and Food Sciences | Agricultural Biotechnology | Agricultural Biotechnology Not Elsewhere Classified | Biological Sciences | Evolutionary Biology | Genetics | Genetics Not Elsewhere Classified | Plant and Fungus Systematics and Taxonomy | Plant Biology | Plant Biology Not Elsewhere Classified | Plant Cell and Molecular Biology | SNP | Vavilov | array | diversity | wheat |

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