Data

V4 2018 eDNA, genetic CPR and large-volume eDNA raw sequencing data

Australian Ocean Data Network
Suter, L. and Polanowski, A. ; SUTER, LEONIE ; POLANOWSKI, ANDREA
Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]
ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=Dataset DOI&rft.title=V4 2018 eDNA, genetic CPR and large-volume eDNA raw sequencing data&rft.identifier=Dataset DOI&rft.publisher=Australian Antarctic Data Centre&rft.description=In this data set we examined whether eDNA samples can detect similar numbers of species and community compositions as genetic continuous plankton recorder (CPR) samples. On the V4 voyage 2018 from Hobart to Macquarie island, small and large volume eDNA samples as well as genetic CPR samples were collected. All samples were sequenced with a metazoan specific cytochrome c oxidase I marker (folder 2018_08_28 eDNA V4 COI contains all genetic CPR and small volume eDNA samples, folder 2019_05_08_eDNA_V4_CBR_Repeats_COI contains some repeated small volume eDNA samples and all large volume eDNA samples (also called CBR samples)). Additionally, all eDNA samples were sequenced using an 18S rRNA marker (folder 2018_09_19 eDNA V4 18s Ramaciotti) to assess overall biodiversity. Each folder contains the raw sequencing data (fastq format) as well as data indexes and readme files. Please contact us if you are planning on using this data (leonie.suter@aad.gov.au). More information about these datasets are contained in the readme files in the dataset.Progress Code: onGoing&rft.creator=Suter, L. and Polanowski, A. &rft.creator=SUTER, LEONIE &rft.creator=POLANOWSKI, ANDREA &rft.date=2020&rft.coverage=westlimit=147.4907331; southlimit=-54.7560595; eastlimit=158.909247; northlimit=-43.6789173&rft.coverage=westlimit=147.4907331; southlimit=-54.7560595; eastlimit=158.909247; northlimit=-43.6789173&rft_rights=This metadata record is publicly available.&rft_rights=These data are publicly available for download from the provided URL.&rft_rights= https://creativecommons.org/licenses/by/4.0/legalcode&rft_rights=This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/). Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4556_V4_eDNA_data when using these data. http://creativecommons.org/licenses/by/4.0/).&rft_rights=Portable Network Graphic&rft_rights=https://i.creativecommons.org/l/by/3.0/88x31.png&rft_rights=Creative Commons by Attribution logo&rft_rights=Attribution 4.0 International (CC BY 4.0)&rft_rights=Legal code for Creative Commons by Attribution 4.0 International license&rft_rights=Attribution 4.0 International (CC BY 4.0)&rft_rights= https://creativecommons.org/licenses/by/4.0/legalcode&rft.type=dataset&rft.language=English Access the data
Cite Saved to MyRDA Save to MyRDA

Licence & Rights:

Other view details
Unknown

https://creativecommons.org/licenses/by/4.0/legalcode

This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/).

Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4556_V4_eDNA_data when using these data.
http://creativecommons.org/licenses/by/4.0/).

Attribution 4.0 International (CC BY 4.0)

https://creativecommons.org/licenses/by/4.0/legalcode

This metadata record is publicly available.

These data are publicly available for download from the provided URL.

Portable Network Graphic

https://i.creativecommons.org/l/by/3.0/88x31.png

Creative Commons by Attribution logo

Attribution 4.0 International (CC BY 4.0)

Legal code for Creative Commons by Attribution 4.0 International license

Access:

Other

Contact Information

metadata@aad.gov.au

Brief description

In this data set we examined whether eDNA samples can detect similar numbers of species and community compositions as genetic continuous plankton recorder (CPR) samples. On the V4 voyage 2018 from Hobart to Macquarie island, small and large volume eDNA samples as well as genetic CPR samples were collected. All samples were sequenced with a metazoan specific cytochrome c oxidase I marker (folder "2018_08_28 eDNA V4 COI" contains all genetic CPR and small volume eDNA samples, folder "2019_05_08_eDNA_V4_CBR_Repeats_COI" contains some repeated small volume eDNA samples and all large volume eDNA samples (also called CBR samples)). Additionally, all eDNA samples were sequenced using an 18S rRNA marker (folder "2018_09_19 eDNA V4 18s Ramaciotti") to assess overall biodiversity. Each folder contains the raw sequencing data (fastq format) as well as data indexes and readme files. Please contact us if you are planning on using this data (leonie.suter@aad.gov.au).

More information about these datasets are contained in the readme files in the dataset.

Lineage

Progress Code: onGoing

Data time period: 2018-03-09 to 2018-03-24

158.909247,-43.6789173 158.909247,-54.7560595 147.4907331,-54.7560595 147.4907331,-43.6789173 158.909247,-43.6789173

153.19999005,-49.2174884

text: westlimit=147.4907331; southlimit=-54.7560595; eastlimit=158.909247; northlimit=-43.6789173

User Contributed Tags    

Login to tag this record with meaningful keywords to make it easier to discover

Other Information
Download the dataset. (GET DATA)

uri : https://data.aad.gov.au/eds/5074/download

Similar data you may be interested in: