Data

Transcriptomic gene expression and network analysis of sexual maturation in the Australian greenlip abalone Haliotis laevigata

Commonwealth Scientific and Industrial Research Organisation
Zhang, Ya ; McDougall, Carmel ; Bar, Ido ; Botwright, Natasha
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25919/d9f3-0435&rft.title=Transcriptomic gene expression and network analysis of sexual maturation in the Australian greenlip abalone Haliotis laevigata&rft.identifier=https://doi.org/10.25919/d9f3-0435&rft.publisher=Commonwealth Scientific and Industrial Research Organisation&rft.description=Raw sequence data, transcriptome assembly and annotation of greenlip abalone at different stages of maturation based on the subjective visual gonad index.Lineage: Tissue from male and female greenlip abalone gonad and ganglia were subject to 150 bp Illumina Novaseq 6000 for de novo transcriptome sequencing. Assembly was completed with Trinity and annotation using DIAMOND against the NCBI non-redundant database. Differential gene expression and network analysis was completed for 35 male and female abalone with visual gonad index 0-3. The CEL-Seq2 custom sequencing protocol was performed on a single lane of a NovaSeq 6000, with a 26 bp read 1, a 95 bp read 2, and a 6bp index read. Differential gene expression analysis was carried out in the R using DESeq2. Cytoscape was used to predict gene network predictions.&rft.creator=Zhang, Ya &rft.creator=McDougall, Carmel &rft.creator=Bar, Ido &rft.creator=Botwright, Natasha &rft.date=2025&rft.edition=v1&rft.coverage=137.43446083333333,-35.59796194444445&rft_rights=Creative Commons Attribution 4.0 International Licence https://creativecommons.org/licenses/by/4.0/&rft_rights=Data is accessible online and may be reused in accordance with licence conditions&rft_rights=All Rights (including copyright) CSIRO 2025.&rft_subject=abalone&rft_subject=haliotis&rft_subject=transcriptome&rft_subject=maturation&rft_subject=reproduction&rft_subject=Aquaculture&rft_subject=Fisheries sciences&rft_subject=AGRICULTURAL, VETERINARY AND FOOD SCIENCES&rft_subject=Genomics and transcriptomics&rft_subject=Bioinformatics and computational biology&rft_subject=BIOLOGICAL SCIENCES&rft.type=dataset&rft.language=English Access the data
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Creative Commons Attribution 4.0 International Licence
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Data is accessible online and may be reused in accordance with licence conditions

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Raw sequence data, transcriptome assembly and annotation of greenlip abalone at different stages of maturation based on the subjective visual gonad index.
Lineage: Tissue from male and female greenlip abalone gonad and ganglia were subject to 150 bp Illumina Novaseq 6000 for de novo transcriptome sequencing. Assembly was completed with Trinity and annotation using DIAMOND against the NCBI non-redundant database. Differential gene expression and network analysis was completed for 35 male and female abalone with visual gonad index 0-3. The CEL-Seq2 custom sequencing protocol was performed on a single lane of a NovaSeq 6000, with a 26 bp read 1, a 95 bp read 2, and a 6bp index read. Differential gene expression analysis was carried out in the R using DESeq2. Cytoscape was used to predict gene network predictions.

Available: 2025-07-15

Data time period: 2011-03-01 to 2014-02-28

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137.43446,-35.59796

137.43446083333,-35.597961944444

Subjects
Agricultural, Veterinary and Food Sciences | Aquaculture | Biological Sciences | Bioinformatics and Computational Biology | Fisheries Sciences | Genomics and Transcriptomics | abalone | haliotis | maturation | reproduction | transcriptome |

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Identifiers
ACN 633 798 857