Data

Totten Glacier ocean & sediment DNA (IN2017_V01)

University of Tasmania, Australia
Werkman, Harko
Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]
ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=http://metadata.imas.utas.edu.au/geonetwork/srv/eng/search?uuid=0187071a-a121-4402-96ea-64930b38bd66&rft.title=Totten Glacier ocean & sediment DNA (IN2017_V01)&rft.identifier=http://metadata.imas.utas.edu.au/geonetwork/srv/eng/search?uuid=0187071a-a121-4402-96ea-64930b38bd66&rft.description=This record presents genetic data underlying the paper 'From the Surface Ocean to the Seafloor: Linking Modern and Paleo-genetics at the Sabrina Coast, East Antarctica (IN2017_V01)' by Armbrecht et al. In this study, we provide the first taxonomic overview of the modern and ancient marine bacterial and eukaryotic communities of the Totten Glacier region, East Antarctica, using a combination of 16S and 18S rRNA amplicon sequencing (modern DNA) and shotgun metagenomic (sedimentary ancient DNA, sedaDNA) analyses, respectively. We explore environmental and geochemical variables that drive these biodiversity patterns. Our data show considerable differences between eukaryote and bacterial signals detected via DNA analyses in the water column vs. the sediments. Organisms that are well represented in deeper waters appear are to have a higher likelihood of becoming preserved in the sediments. The study provides the first assessment of DNA transfer from ocean waters to sediments, while also providing a broad overview of the biological communities occurring in the climatically important Totten Glacier region. (Please note that this record is mirrored in the UTAS Research Data Portal, here: https://rdp.utas.edu.au/metadata/8628529b-49cf-42d4-9459-3c1e97f70d98)Maintenance and Update Frequency: notPlannedStatement: We extracted and analysed modern (water column) and ancient (sediments) marine bacterial and eukaryotic DNA of the Totten Glacier region. A combination of 16S and 18S rRNA amplicon sequencing (modern DNA) and shotgun metagenomics (sedimentary ancient DNA, sedaDNA) was used. We explore environmental and geochemical variables driving biodiversity patterns of bacteria and eukaryotes.&rft.creator=Werkman, Harko &rft.date=2023&rft.coverage=westlimit=111.75585937500026; southlimit=-67.3317271701404; eastlimit=119.4902343750002; northlimit=-64.68309334933079&rft.coverage=westlimit=111.75585937500026; southlimit=-67.3317271701404; eastlimit=119.4902343750002; northlimit=-64.68309334933079&rft_rights=Data, products and services from IMAS are provided as is without any warranty as to fitness for a particular purpose.&rft_rights=The data described in this record are the intellectual property of the University of Tasmania through the Institute for Marine and Antarctic Studies.&rft_rights=This dataset is the intellectual property of the University of Tasmania (UTAS) through the Institute for Marine and Antarctic Studies (IMAS).&rft_rights=&rft_rights= https://creativecommons.org/licenses/by-nc/4.0/&rft_rights=https://licensebuttons.net/l/by-nc/4.0/88x31.png&rft_rights=WWW:LINK-1.0-http--related&rft_rights=License Graphic&rft_rights=Creative Commons Attribution-NonCommercial 4.0 International License&rft_rights=CC-BY-NC&rft_rights=4.0&rft_rights=http://creativecommons.org/international/&rft_rights=WWW:LINK-1.0-http--related&rft_rights=WWW:LINK-1.0-http--related&rft_rights=License Text&rft_rights=The citation in a list of references is: Citation author name/s (year metadata published), metadata title. Citation author organisation/s. File identifier and Data accessed at (add http link).&rft_rights=Creative Commons Attribution-NonCommercial 4.0 International License http://creativecommons.org/licenses/by-nc/4.0&rft_subject=biota&rft_subject=Antarctica&rft_subject=Southern Ocean&rft_subject=Totten Glacier&rft_subject=Sabrina Coast&rft_subject=ancient DNA&rft_subject=modern DNA&rft_subject=marine&rft_subject=diatoms&rft_subject=radiolarians&rft_subject=bacteria&rft_subject=Palaeoecology&rft_subject=Ecology&rft_subject=BIOLOGICAL SCIENCES&rft_subject=Biological oceanography&rft_subject=Oceanography&rft_subject=EARTH SCIENCES&rft_subject=Ecological impacts of climate change and ecological adaptation&rft_subject=Climate change impacts and adaptation&rft_subject=ENVIRONMENTAL SCIENCES&rft_subject=Palaeoecology&rft_subject=BIOLOGICAL SCIENCES&rft_subject=ECOLOGY&rft_subject=Biological Oceanography&rft_subject=EARTH SCIENCES&rft_subject=OCEANOGRAPHY&rft_subject=Ecological Impacts of Climate Change&rft_subject=ENVIRONMENTAL SCIENCES&rft_subject=ECOLOGICAL APPLICATIONS&rft_subject=BIOLOGICAL RECORDS&rft_subject=EARTH SCIENCE&rft_subject=CLIMATE INDICATORS&rft_subject=PALEOCLIMATE INDICATORS&rft_subject=SEDIMENTS&rft_subject=PALEOCLIMATE&rft_subject=OCEAN/LAKE RECORDS&rft_subject=COMMUNITY DYNAMICS&rft_subject=BIOSPHERE&rft_subject=ECOLOGICAL DYNAMICS&rft_subject=BACTERIA/ARCHAEA&rft_subject=BIOLOGICAL CLASSIFICATION&rft.type=dataset&rft.language=English Access the data
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Data, products and services from IMAS are provided "as is" without any warranty as to fitness for a particular purpose.

The data described in this record are the intellectual property of the University of Tasmania through the Institute for Marine and Antarctic Studies.

This dataset is the intellectual property of the University of Tasmania (UTAS) through the Institute for Marine and Antarctic Studies (IMAS).

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Brief description

This record presents genetic data underlying the paper 'From the Surface Ocean to the Seafloor: Linking Modern and Paleo-genetics at the Sabrina Coast, East Antarctica (IN2017_V01)' by Armbrecht et al. In this study, we provide the first taxonomic overview of the modern and ancient marine bacterial and eukaryotic communities of the Totten Glacier region, East Antarctica, using a combination of 16S and 18S rRNA amplicon sequencing (modern DNA) and shotgun metagenomic (sedimentary ancient DNA, sedaDNA) analyses, respectively. We explore environmental and geochemical variables that drive these biodiversity patterns. Our data show considerable differences between eukaryote and bacterial signals detected via DNA analyses in the water column vs. the sediments. Organisms that are well represented in deeper waters appear are to have a higher likelihood of becoming preserved in the sediments. The study provides the first assessment of DNA transfer from ocean waters to sediments, while also providing a broad overview of the biological communities occurring in the climatically important Totten Glacier region.

(Please note that this record is mirrored in the UTAS Research Data Portal, here: https://rdp.utas.edu.au/metadata/8628529b-49cf-42d4-9459-3c1e97f70d98)

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Maintenance and Update Frequency: notPlanned
Statement: We extracted and analysed modern (water column) and ancient (sediments) marine bacterial and eukaryotic DNA of the Totten Glacier region. A combination of 16S and 18S rRNA amplicon sequencing (modern DNA) and shotgun metagenomics (sedimentary ancient DNA, sedaDNA) was used. We explore environmental and geochemical variables driving biodiversity patterns of bacteria and eukaryotes.

Issued: 29 03 2023

Data time period: 2017-01-01 to 2017-03-31

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119.49023,-64.68309 119.49023,-67.33173 111.75586,-67.33173 111.75586,-64.68309 119.49023,-64.68309

115.623046875,-66.007410259736

text: westlimit=111.75585937500026; southlimit=-67.3317271701404; eastlimit=119.4902343750002; northlimit=-64.68309334933079

Subjects
Antarctica | BACTERIA/ARCHAEA | BIOLOGICAL CLASSIFICATION | BIOLOGICAL RECORDS | Biological Sciences | Biological Sciences | BIOSPHERE | Biological Oceanography | Biological Oceanography | CLIMATE INDICATORS | COMMUNITY DYNAMICS | Climate Change Impacts and Adaptation | EARTH SCIENCE | Earth Sciences | Earth Sciences | Ecological Applications | ECOLOGICAL DYNAMICS | Ecology | Environmental Sciences | Environmental Sciences | Ecological Impacts of Climate Change | Ecological Impacts of Climate Change and Ecological Adaptation | Ecology | OCEAN/LAKE RECORDS | Oceanography | Oceanography | PALEOCLIMATE | PALEOCLIMATE INDICATORS | Palaeoecology | Palaeoecology | SEDIMENTS | Sabrina Coast | Southern Ocean | Totten Glacier | ancient DNA | bacteria | biota | diatoms | marine | modern DNA | radiolarians |

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Identifiers
  • global : 0187071a-a121-4402-96ea-64930b38bd66
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