Data

Tonka HPLC Pigment and Ocean Colour Data July1997 - November 1998

Integrated Marine Observing System
CSIRO O&A, Information & Data Centre (Point of contact) CSIRO Oceans & Atmosphere - Hobart (Associated with) Clementson, Lesley (Point of contact)
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=https://marlin.csiro.au/geonetwork/srv/eng/catalog.search#/metadata/45657798-dd6d-4bd5-a82d-223b9f16783e&rft.title=Tonka HPLC Pigment and Ocean Colour Data July1997 - November 1998&rft.identifier=Anzlic Identifier: ANZCW0306006426&rft.publisher=Integrated Marine Observing System&rft.description=This record contains data collected on the FV Tonka between 10 July 1997 and 9 November 1998. During eight trips out of Mooloolaba, Queensland, 71 samples were collected. The data can be used for Ocean Colour sensor validation. Parameters measured are the concentration of chlorophyll and carotenoid pigments and satellite retrieved chlorophyll a estimate.Progress Code: completedMaintenance and Update Frequency: notPlannedStatement: Water samples were taken on-board the FV Tonka. Samples were filtered onboard. Samples were analysed and QC procedures were carried out in the Ocean Colour Laboratory. Pigment analysis: 4 litres of sample water was filtered through a 47 mm glass fibre filter (Whatman GF/F) and then stored in liquid nitrogen until analysis. To extract the pigments, the filters were cut into small pieces and covered with 100% acetone (3 mls) in a 10 ml centrifuge tube. The samples were vortexed for about 30 seconds and then sonicated for 15 minutes in the dark. The samples were then kept in the dark at 4 °C for approximately 15 hours. After this time 200 µL water was added to the acetone such that the extract mixture was 90:10 acetone:water (vol:vol) and sonicated once more for 15 minutes. The extracts were centrifuged to remove the filter paper and then filtered through a 0.2 µm membrane filter (Whatman, anatope) prior to analysis by HPLC using a Waters high performance liquid chromatograph, comprising a 600 controller, 717 plus refrigerated autosampler and a 996 photo-diode array detector. Pigments were separated using a stainless steel 25 cm x 4.6 mm I.D. column packed with ODS2 of 5 µm particle size (SGE) with gradient elution as described in Wright et al., [1991]. The separated pigments were detected at 436 nm and identified against standard spectra using Waters Millenium software. Concentrations of chlorophyll a, chlorophyll b, b,b-carotene and b,e-carotene in sample chromatograms were determined from standards (Sigma) and all other pigment concentrations were determined from standards of purified pigments isolated from algal cultures. Spectral absorption: 4 litres of sample water was filtered through a 25 mm glass fibre filter (Whatman GF/F) and the filter then stored flat in liquid nitrogen until analysis. Optical density spectra for total particulate matter were obtained using a GBC 916 UV/VIS dual beam spectrophotometer.&rft.creator=Anonymous&rft.date=2004&rft.coverage=westlimit=153; southlimit=-27; eastlimit=155; northlimit=-25&rft.coverage=westlimit=153; southlimit=-27; eastlimit=155; northlimit=-25&rft_rights=&rft_rights=Data is made available under a Creative Commons Attribution 4.0 International Licence, please see link. Data is supplied 'as is' without any warranty or guarantee except as required by law to be given to you. The data may not be free of error, comprehensive, current or appropriate for your particular purpose. You accept all risk and responsibility for its use. ATTRIBUTION STATEMENT: The dataset [Insert-dataset-name-here] downloaded on [Insert-DD-Mmm-YYYY-here] was provided by CSIRO.&rft_subject=oceans&rft_subject=Earth Science | Oceans | Ocean Chemistry | Chlorophyll&rft_subject=Earth Science | Oceans | Ocean Chemistry | Pigments&rft_subject=Earth Science | Oceans | Ocean Optics | Ocean Color&rft_subject=Earth Science | Terrestrial Hydrosphere | Water Quality/Water Chemistry | Chlorophyll&rft_subject=CTDs (Conductivity-Temperature-Depth Profilers)&rft_subject=Fluorometers&rft_subject=HPLC (High Performance Liquid Chromatography)&rft_subject=Niskin Bottles&rft_subject=Spectrophotometers&rft_subject=Coastal Waters (Australia) | Queensland Coast South, QLD&rft_subject=WfO Biogeochemistry&rft_subject=Development, application and evaluation of the use of remotely sensed data by Australian fisheries (FRDC project no. 94/045) 1994-2000&rft_subject=Practical salinity of the water body&rft_subject=Temperature of the water body&rft_subject=Pressure (measured variable) in the water body exerted by overlying sea water and any medium above it&rft_subject=Pressure (measured variable) in the water body exerted by overlying sea water only&rft_subject=CTD&rft_subject=research vessel&rft.type=dataset&rft.language=English Access the data
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Data is made available under a Creative Commons Attribution 4.0 International Licence, please see link. Data is supplied 'as is' without any warranty or guarantee except as required by law to be given to you. The data may not be free of error, comprehensive, current or appropriate for your particular purpose. You accept all risk and responsibility for its use. ATTRIBUTION STATEMENT: The dataset [Insert-dataset-name-here] downloaded on [Insert-DD-Mmm-YYYY-here] was provided by CSIRO.

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This record contains data collected on the FV Tonka between 10 July 1997 and 9 November 1998. During eight trips out of Mooloolaba, Queensland, 71 samples were collected. The data can be used for Ocean Colour sensor validation. Parameters measured are the concentration of chlorophyll and carotenoid pigments and satellite retrieved chlorophyll a estimate.

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Progress Code: completed
Maintenance and Update Frequency: notPlanned
Statement: Water samples were taken on-board the FV Tonka. Samples were filtered onboard. Samples were analysed and QC procedures were carried out in the Ocean Colour Laboratory. Pigment analysis: 4 litres of sample water was filtered through a 47 mm glass fibre filter (Whatman GF/F) and then stored in liquid nitrogen until analysis. To extract the pigments, the filters were cut into small pieces and covered with 100% acetone (3 mls) in a 10 ml centrifuge tube. The samples were vortexed for about 30 seconds and then sonicated for 15 minutes in the dark. The samples were then kept in the dark at 4 °C for approximately 15 hours. After this time 200 µL water was added to the acetone such that the extract mixture was 90:10 acetone:water (vol:vol) and sonicated once more for 15 minutes. The extracts were centrifuged to remove the filter paper and then filtered through a 0.2 µm membrane filter (Whatman, anatope) prior to analysis by HPLC using a Waters high performance liquid chromatograph, comprising a 600 controller, 717 plus refrigerated autosampler and a 996 photo-diode array detector. Pigments were separated using a stainless steel 25 cm x 4.6 mm I.D. column packed with ODS2 of 5 µm particle size (SGE) with gradient elution as described in Wright et al., [1991]. The separated pigments were detected at 436 nm and identified against standard spectra using Waters Millenium software. Concentrations of chlorophyll a, chlorophyll b, b,b-carotene and b,e-carotene in sample chromatograms were determined from standards (Sigma) and all other pigment concentrations were determined from standards of purified pigments isolated from algal cultures. Spectral absorption: 4 litres of sample water was filtered through a 25 mm glass fibre filter (Whatman GF/F) and the filter then stored flat in liquid nitrogen until analysis. Optical density spectra for total particulate matter were obtained using a GBC 916 UV/VIS dual beam spectrophotometer.

Notes

Credit
FRDC funding Project 94/45
Credit
Lesley Clementson
Credit
Don McKenzie
Credit
Jock Young
Credit
John Parslow
Credit
Vincent Lyne

Data time period: 1997-07-10 to 1998-11-09

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155,-25 155,-27 153,-27 153,-25 155,-25

154,-26

text: westlimit=153; southlimit=-27; eastlimit=155; northlimit=-25

Subjects
CTD | CTDs (Conductivity-Temperature-Depth Profilers) | Coastal Waters (Australia) | Queensland Coast South, QLD | Development, application and evaluation of the use of remotely sensed data by Australian fisheries (FRDC project no. 94/045) 1994-2000 | Earth Science | Oceans | Ocean Chemistry | Chlorophyll | Earth Science | Oceans | Ocean Chemistry | Pigments | Earth Science | Oceans | Ocean Optics | Ocean Color | Earth Science | Terrestrial Hydrosphere | Water Quality/Water Chemistry | Chlorophyll | Fluorometers | HPLC (High Performance Liquid Chromatography) | Niskin Bottles | Practical salinity of the water body | Pressure (measured variable) in the water body exerted by overlying sea water and any medium above it | Pressure (measured variable) in the water body exerted by overlying sea water only | Spectrophotometers | Temperature of the water body | WfO Biogeochemistry | oceans | research vessel |

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Other Information
Access all data - Australian-waters Earth Observation Phytoplankton-type Products (AEsOP) (Data Link)

url : https://aesop.csiro.au/

Data also available via IMOS and AODN portal (Data Link)

url : https://portal.aodn.org.au/

Donwload LC_IMOS_SRS_BioOptical_Tonka_T6_June_1998_pigments.zip (.csv, .xls, .nc) (Data Link)

url : https://www.marine.csiro.au/data/trawler/download.cfm?file_id=934

Download LC_IMOS_SRS_BioOptical_Tonka_T1_July_1997_pigments.zip (.csv, .xls, .nc) (Data Link)

url : https://www.marine.csiro.au/data/trawler/download.cfm?file_id=935

Download LC_IMOS_SRS_BioOptical_Tonka_T2_August_1997_pigments.zip (.csv, .xls, .nc) (Data Link)

url : https://www.marine.csiro.au/data/trawler/download.cfm?file_id=936

Download LC_IMOS_SRS_BioOptical_Tonka_T3_October_1997_pigments.zip (.csv, .xls, .nc) (Data Link)

url : https://www.marine.csiro.au/data/trawler/download.cfm?file_id=937

Download LC_IMOS_SRS_BioOptical_Tonka_T4_November_1997_pigments.zip (.csv, .xls, .nc) (Data Link)

url : https://www.marine.csiro.au/data/trawler/download.cfm?file_id=938

Download LC_IMOS_SRS_BioOptical_Tonka_T5_February_1998_pigments.zip (.csv, .xls, .nc) (Data Link)

url : https://www.marine.csiro.au/data/trawler/download.cfm?file_id=939

Download LC_IMOS_SRS_BioOptical_Tonka_T7_August_1998_pigments.zip (.csv, .xls, .nc) (Data Link)

url : https://www.marine.csiro.au/data/trawler/download.cfm?file_id=940

Download LC_IMOS_SRS_BioOptical_Tonka_T8_November_1998_pigments.zip (.csv, .xls, .nc) (Data Link)

url : https://www.marine.csiro.au/data/trawler/download.cfm?file_id=941

This work is licensed under a Creative Commons Attribution 4.0 International License (Documentation Link)

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Identifiers
  • Local : Anzlic Identifier: ANZCW0306006426
  • Local : Marlin Record Number: 6426
  • global : 45657798-dd6d-4bd5-a82d-223b9f16783e