Data

The Australian Phytoplankton Database (1844 - 2016) - abundance and biovolume (SUPERSEDED BY ONGOING COLLECTION)

Australian Ocean Data Network
Davies, Claire H. ; Coughlan, Alex ; Hallegraeff, Gustaaf ; Ajani, Penelope ; Armbrecht, Linda ; Atkins, Natalia ; Bonham, Prudence ; Brett, Steve ; Brinkman, Richard ; Burford, Michele ; Clementson, Lesley ; Coad, Peter ; Coman, Frank ; Davies, Diana ; Dela-cruz, Jocelyn ; Devlin, Michelle ; Edgar, Steven ; Eriksen, Ruth ; Furnas, Miles ; Hassler, Christel ; Hill, David ; Holmes, Michael ; Ingleton, Tim ; Jameson, Ian ; Leterme, Sophie C. ; Lonborg, Christian ; McLaughlin, James ; McEnnulty, Felicity ; McKinnon, A. David ; Miller, Margaret ; Murray, Shauna ; Nayar, Sasi ; Patten, Renee ; Pritchard, Tim ; Proctor, Roger ; Purcell-Meyerink, Dianne ; Raes, Eric ; Rissik, David ; Ruszczyk, Jason ; Slotwinski, Anita ; Swadling, Kerrie ; Tattersall, Katherine ; Thompson, Peter ; Thomson, Paul ; Tonks, Mark ; Trull, Thomas W. ; Uribe-Palomino, Julian ; Waite, Anya M. ; Yauwenas, Rouna ; Zammit, Anthony ; Richardson, Anthony J.
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We have lodged this dataset with the Australian Ocean Data Network (http://imos.aodn.org.au/), allowing public access. The Australian Phytoplankton Database will be invaluable for global change studies, as it allows analysis of ecological indicators of climate change and eutrophication (e.g., changes in distribution; diatom:dinoflagellate ratios). In addition, the standardised conversion of abundance records to biomass provides modellers with quantifiable data to initialise and validate ecosystem models of lower marine trophic levels. This is a static snapshot of the database as at March 2016. To access subsequent additions in a dynamic database, please refer to the following metadata record https://catalogue-imos.aodn.org.au:443/geonetwork/srv/api/records/75f4f1fc-bee3-4498-ab71-aa1ab29ab2c0Maintenance and Update Frequency: asNeededStatement: The data sources are varied and the data does not belong to the custodian of this schema, so the quality of the data cannot be verified. Persons should refer to the record for each of the projects included for further information.Statement: ATTRIBUTE STATEMENT: Field information for IMOS_APD_data; Record_id - Unique record identifying number; Project_id - Unique project identifying number; Sample_id - Unique sample identifying number; Latitude - Latitude where specimen was found in decimal degrees; Longitude - Longitude where the specimen was found in decimal degrees; Sample_time_UTC - Full sampling date in UTC; Sample_year - Year in which sampling took place; Sample_month - Month in which sampling took place, null if the date resolution is year; Sample_day - Day on which sampling took place, null if the date resolution is month; Date_resolution - The date resolution applicable to the project, i.e. year, month, day, time; Sample_depth - Maximum depth of a vertical sample in metres, average tow depth of a horizontal sample in metres or null if depth is unknown; Functional_group - Functional group of specimen, i.e. diatom, dinoflagellate etc.; Taxon_name - Taxonomic name given to specimen in database; Family - Taxonomic family of specimen as defined by WoRMS; Genus - Taxonomic genus of specimen as defined by WoRMS; Species - Taxonomic species of specimen as defined by WoRMS; Cells_l - Number of cells in a litre of water (cells per litre); Presence_absence - 1=present, 0=absent from sample; Biovolume_shape - The generic shape used to calculate the biovolume of the cell Biovolume_um3_l - cell biovolume; Field information for IMOS_APD_metadata; Project_id - Unique project identifying number; Project_description - Short description of the project; Custodian_details - Name and affiliation of the contributing author; location - General location of sampling for that project; Date_resolution - The date resolution applicable to the project, i.e. year, month, day, time; Start_date - First sample date for the project; End_date - Final sample date for the project; No_samples - The number of samples taken in the project; No_records - The number of records for the project; Resolution - The taxonomic resolution applicable to the project; Sample_method - The method used to collect the samples, i.e net, niskin etc.; Identification_method - The method used to identify the specimens, i.e. light microscopy, SEM; Magnification - Maximum magnification used to identify the specimens; Preservative - The method of preservation, if known, used in the samples Citation - Publication reference or citation for further project information;&rft.creator=Davies, Claire H. &rft.creator=Coughlan, Alex &rft.creator=Hallegraeff, Gustaaf &rft.creator=Ajani, Penelope &rft.creator=Armbrecht, Linda &rft.creator=Atkins, Natalia &rft.creator=Bonham, Prudence &rft.creator=Brett, Steve &rft.creator=Brinkman, Richard &rft.creator=Burford, Michele &rft.creator=Clementson, Lesley &rft.creator=Coad, Peter &rft.creator=Coman, Frank &rft.creator=Davies, Diana &rft.creator=Dela-cruz, Jocelyn &rft.creator=Devlin, Michelle &rft.creator=Edgar, Steven &rft.creator=Eriksen, Ruth &rft.creator=Furnas, Miles &rft.creator=Hassler, Christel &rft.creator=Hill, David &rft.creator=Holmes, Michael &rft.creator=Ingleton, Tim &rft.creator=Jameson, Ian &rft.creator=Leterme, Sophie C. &rft.creator=Lonborg, Christian &rft.creator=McLaughlin, James &rft.creator=McEnnulty, Felicity &rft.creator=McKinnon, A. 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Please check with custodian, details as in IMOS_APD_metadata.&rft_rights=&rft_rights= http://creativecommons.org/licenses/by/4.0/&rft_rights=https://licensebuttons.net/l/by/4.0/88x31.png&rft_rights=WWW:LINK-1.0-http--related&rft_rights=License Graphic&rft_rights=Creative Commons Attribution 4.0 International License&rft_rights=http://creativecommons.org/international/&rft_rights=WWW:LINK-1.0-http--related&rft_rights=WWW:LINK-1.0-http--related&rft_rights=License Text&rft_rights=This is the bibliographic reference for the dataset and this metadata record that describes it: Davies CH, Coughlan A, Hallegraeff G, Ajani P, Armbrecht L, Atkins N, Bonham P, Brett S, Brinkman R, Burford M, Clementson L, Coad P, Coman F, Davies D, Dela-cruz J, Devlin M, Edgar S, Eriksen R, Furnas M, Hassler C, Hill D, Holmes M, Ingleton T, Jameson I, Leterme SC, Lonborg C, McLaughlin J, McEnnulty F, McKinnon AD, Miller M, Murray S, Nayar S, Patten R, Pritchard T, Proctor R, Purcell-Meyerink D, Raes E, Rissik D, Ruszczyk J, Slotwinski A, Swadling K, Tattersall K, Thompson P, Thomson P, Tonks M, Trull TW, Uribe-Palomino J, Waite AM, Yauwenas R, Zammit A, Richardson AJ (2016), The Australian Phytoplankton Database (1844 - 2016) - abundance and biovolume. Australian Ocean Data Network - DOI: 10.4225/69/56454b2ba2f79 (http://dx.doi.org/10.4225/69/56454b2ba2f79)&rft_rights=If data from multiple projects are used, please acknowledge the data paper publication; if individual project data are used, please acknowledge use of data as per the custodian information.&rft_rights=The following projects require amendments to the citations in the database, please cite as below: Project 752 Citation: Koubbi P., Goffart A., Hecq J.H., Swadling K., Beans C., Wright S., 2007. Plankton and ichthyoplankton database of the Icota-Pelagant Programmes from Terre Adélie to the Mertz Glacier Tongue, East-Antarctica, in January 2004. http://www.vliz.be/en/imis?module=dataset&dasid=1335 Project 778 Citation: Koubbi P., Goffart A., Hecq J.H., Swadling K., Beans C., Wright S., 2007. Plankton and ichthyoplankton database of the Icota-Pelagant Programmes from Terre Adélie to the Mertz Glacier Tongue, East-Antarctica, in January 2004. http://www.vliz.be/en/imis?module=dataset&dasid=1335 Project 746 Citation: Trull, T.W. and Bray, S.G. (1999, updated 2016) Subantarctic Zone (SAZ) Project and Sediment Trap Moorings. Australian Antarctic Data Centre - doi:10.4225/15/5774826D27B59 Project 748 Citation: van den Enden, D. (1999, updated 2015) Electron Microscope Database. Australian Antarctic Data Centre - doi:10.4225/15/5773130A3E465 Project 744 Citation: Franklin, D.C. (2003, updated 2014) Recent diatom and foraminiferal assemblages in surficial sediments of Prydz Bay, Antarctica. Australian Antarctic Data Centre - doi:10.4225/15/577312B0D193B&rft_rights=If using data from Project 599 the National Reference Stations or Project 597 the Australian Continuous Plankton Recorder, please use the following acknowledgement: Data was sourced from Australia’s Integrated Marine Observing System (IMOS) – IMOS is enabled by the National Collaborative Research Infrastructure strategy (NCRIS).&rft_rights=Similarly for Projects 806 and 1066, please use the following acknowledgement: “A part of the data included in the database was obtained with support from the Great Barrier Reef Marine Park Authority, through funding from the Australian Government Reef Program and from the Australian Institute of Marine Science”.&rft_rights=Please acknowledge funding bodies accordingly when using these data.&rft_rights=We would also advise the data user to enter into collaboration with the researchers involved in the data they use - understanding the history of a project will add value to the research.&rft_rights=Creative Commons Attribution 4.0 International License http://creativecommons.org/licenses/by/4.0&rft_subject=biota&rft_subject=oceans&rft_subject=Earth Science | Biological Classification | Animals/Invertebrates&rft_subject=Earth Science | Biological Classification | Protists | Plankton | Phytoplankton&rft_subject=Earth Science | Biosphere | Aquatic Ecosystems | Coastal Habitat&rft_subject=Earth Science | Biosphere | Aquatic Ecosystems | Estuarine Habitat&rft_subject=Earth Science | Biosphere | Aquatic Ecosystems | Pelagic Habitat&rft_subject=Earth Science | Biosphere | Aquatic Ecosystems | Plankton | Zooplankton&rft_subject=Earth Science | Biosphere | Aquatic Ecosystems | Reef Habitat&rft_subject=Boats and Small Vessels&rft_subject=Microscopes | Optical Microscopes&rft_subject=Microscopes | Optical Microscopes | Fluorescence Microscopes&rft_subject=Microscopes | Scanning Electron Microscopes&rft_subject=Microscopes | Transmission Electron Microscopes&rft_subject=Nets | Plankton Nets/Drop Nets&rft_subject=Nets | Plankton Nets/Drop Nets | Phytoplankton Nets&rft_subject=Niskin Bottles&rft_subject=Countries | Australia&rft_subject=CMAR Marine Plankton&rft_subject=Centopages furcatus&rft_subject=Clausocalanus arcuicornis&rft_subject=Clausocalanus furcatus&rft_subject=Corycaeus agilis&rft_subject=Cosmocalanus darwinii&rft_subject=Oithona plumifera&rft_subject=Oncaea venusta&rft_subject=Paracalanus aculeatus&rft_subject=Paracalanus indicus&rft_subject=Temora turbinata&rft_subject=Global / Oceans | Indian Ocean&rft_subject=Global / Oceans | Pacific Ocean&rft_subject=Global / Oceans | Southern Ocean&rft_subject=Marine Features (Australia) | Bass Strait, TAS/VIC&rft_subject=Marine Features (Australia) | Great Australian Bight, SA/WA&rft_subject=Regional Seas | Arafura Sea&rft_subject=Regional Seas | Coral Sea&rft_subject=Regional Seas | Solomon Sea&rft_subject=Regional Seas | Timor Sea&rft_subject=Regional Seas | Tasman Sea&rft_subject=Continents | Antarctica&rft_subject=Countries | Indonesia&rft_subject=Countries | New Caledonia&rft_subject=Countries | New Zealand&rft_subject=Countries | Papua New Guinea&rft_subject=Countries | Solomon Islands&rft_subject=Countries | Timor-Leste&rft_subject=Countries | Vanuatu&rft_subject=Marine Features (Australia) | Great Barrier Reef, QLD&rft_subject=Offshore Islands (Australia) | Macquarie Island&rft_subject=States, Territories (Australia) | South Australia&rft_subject=States, Territories (Australia) | New South Wales&rft_subject=States, Territories (Australia) | Northern Territory&rft_subject=States, Territories (Australia) | Queensland&rft_subject=States, Territories (Australia) | Tasmania&rft_subject=States, Territories (Australia) | Victoria&rft_subject=States, Territories (Australia) | Western Australia&rft_subject=Abundance of biota&rft_subject=Biotic taxonomic identification&rft_subject=Biovolume&rft.type=dataset&rft.language=English Access the data
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This is the bibliographic reference for the dataset and this metadata record that describes it: Davies CH, Coughlan A, Hallegraeff G, Ajani P, Armbrecht L, Atkins N, Bonham P, Brett S, Brinkman R, Burford M, Clementson L, Coad P, Coman F, Davies D, Dela-cruz J, Devlin M, Edgar S, Eriksen R, Furnas M, Hassler C, Hill D, Holmes M, Ingleton T, Jameson I, Leterme SC, Lonborg C, McLaughlin J, McEnnulty F, McKinnon AD, Miller M, Murray S, Nayar S, Patten R, Pritchard T, Proctor R, Purcell-Meyerink D, Raes E, Rissik D, Ruszczyk J, Slotwinski A, Swadling K, Tattersall K, Thompson P, Thomson P, Tonks M, Trull TW, Uribe-Palomino J, Waite AM, Yauwenas R, Zammit A, Richardson AJ (2016), The Australian Phytoplankton Database (1844 - 2016) - abundance and biovolume. Australian Ocean Data Network - DOI: 10.4225/69/56454b2ba2f79 (http://dx.doi.org/10.4225/69/56454b2ba2f79)

If data from multiple projects are used, please acknowledge the data paper publication; if individual project data are used, please acknowledge use of data as per the custodian information.

The following projects require amendments to the citations in the database, please cite as below: Project 752 Citation: Koubbi P., Goffart A., Hecq J.H., Swadling K., Beans C., Wright S., 2007. Plankton and ichthyoplankton database of the Icota-Pelagant Programmes from Terre Adélie to the Mertz Glacier Tongue, East-Antarctica, in January 2004. http://www.vliz.be/en/imis?module=dataset&dasid=1335 Project 778 Citation: Koubbi P., Goffart A., Hecq J.H., Swadling K., Beans C., Wright S., 2007. Plankton and ichthyoplankton database of the Icota-Pelagant Programmes from Terre Adélie to the Mertz Glacier Tongue, East-Antarctica, in January 2004. http://www.vliz.be/en/imis?module=dataset&dasid=1335 Project 746 Citation: Trull, T.W. and Bray, S.G. (1999, updated 2016) Subantarctic Zone (SAZ) Project and Sediment Trap Moorings. Australian Antarctic Data Centre - doi:10.4225/15/5774826D27B59 Project 748 Citation: van den Enden, D. (1999, updated 2015) Electron Microscope Database. Australian Antarctic Data Centre - doi:10.4225/15/5773130A3E465 Project 744 Citation: Franklin, D.C. (2003, updated 2014) Recent diatom and foraminiferal assemblages in surficial sediments of Prydz Bay, Antarctica. Australian Antarctic Data Centre - doi:10.4225/15/577312B0D193B

If using data from Project 599 the National Reference Stations or Project 597 the Australian Continuous Plankton Recorder, please use the following acknowledgement: "Data was sourced from Australia’s Integrated Marine Observing System (IMOS) – IMOS is enabled by the National Collaborative Research Infrastructure strategy (NCRIS)."

Similarly for Projects 806 and 1066, please use the following acknowledgement: “A part of the data included in the database was obtained with support from the Great Barrier Reef Marine Park Authority, through funding from the Australian Government Reef Program and from the Australian Institute of Marine Science”.

Please acknowledge funding bodies accordingly when using these data.

We would also advise the data user to enter into collaboration with the researchers involved in the data they use - understanding the history of a project will add value to the research.

Access:

Open

Brief description

There have been many individual phytoplankton datasets collected across Australia since the mid 1900s, but most are unavailable to the research community. We have searched archives, contacted researchers, and scanned the primary and grey literature to collate 3,665,221 records of marine phytoplankton species from Australian waters from 1844 to the present. Many of these are small datasets collected for local questions, but combined they provide over 170 years of data on phytoplankton communities in Australian waters. Units and taxonomy have been standardised, obviously erroneous data removed, and all metadata included. We have lodged this dataset with the Australian Ocean Data Network (http://imos.aodn.org.au/), allowing public access. The Australian Phytoplankton Database will be invaluable for global change studies, as it allows analysis of ecological indicators of climate change and eutrophication (e.g., changes in distribution; diatom:dinoflagellate ratios). In addition, the standardised conversion of abundance records to biomass provides modellers with quantifiable data to initialise and validate ecosystem models of lower marine trophic levels. This is a static snapshot of the database as at March 2016. To access subsequent additions in a dynamic database, please refer to the following metadata record https://catalogue-imos.aodn.org.au:443/geonetwork/srv/api/records/75f4f1fc-bee3-4498-ab71-aa1ab29ab2c0

Lineage

Maintenance and Update Frequency: asNeeded
Statement: The data sources are varied and the data does not belong to the custodian of this schema, so the quality of the data cannot be verified. Persons should refer to the record for each of the projects included for further information.
Statement: ATTRIBUTE STATEMENT: Field information for IMOS_APD_data; Record_id - Unique record identifying number; Project_id - Unique project identifying number; Sample_id - Unique sample identifying number; Latitude - Latitude where specimen was found in decimal degrees; Longitude - Longitude where the specimen was found in decimal degrees; Sample_time_UTC - Full sampling date in UTC; Sample_year - Year in which sampling took place; Sample_month - Month in which sampling took place, null if the date resolution is year; Sample_day - Day on which sampling took place, null if the date resolution is month; Date_resolution - The date resolution applicable to the project, i.e. year, month, day, time; Sample_depth - Maximum depth of a vertical sample in metres, average tow depth of a horizontal sample in metres or null if depth is unknown; Functional_group - Functional group of specimen, i.e. diatom, dinoflagellate etc.; Taxon_name - Taxonomic name given to specimen in database; Family - Taxonomic family of specimen as defined by WoRMS; Genus - Taxonomic genus of specimen as defined by WoRMS; Species - Taxonomic species of specimen as defined by WoRMS; Cells_l - Number of cells in a litre of water (cells per litre); Presence_absence - 1=present, 0=absent from sample; Biovolume_shape - The generic shape used to calculate the biovolume of the cell Biovolume_um3_l - cell biovolume; Field information for IMOS_APD_metadata; Project_id - Unique project identifying number; Project_description - Short description of the project; Custodian_details - Name and affiliation of the contributing author; location - General location of sampling for that project; Date_resolution - The date resolution applicable to the project, i.e. year, month, day, time; Start_date - First sample date for the project; End_date - Final sample date for the project; No_samples - The number of samples taken in the project; No_records - The number of records for the project; Resolution - The taxonomic resolution applicable to the project; Sample_method - The method used to collect the samples, i.e net, niskin etc.; Identification_method - The method used to identify the specimens, i.e. light microscopy, SEM; Magnification - Maximum magnification used to identify the specimens; Preservative - The method of preservation, if known, used in the samples Citation - Publication reference or citation for further project information;

Notes

Credit
We acknowledge the contributions from all collaborators and their institutions.

Created: 23 07 2015

Data time period: 1844-01-02 to 2016-01-20

This dataset is part of a larger collection

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167.5,-60

text: uplimit=-10; downlimit=-1000

Subjects
Abundance of biota | Biotic taxonomic identification | Biovolume | Boats and Small Vessels | CMAR Marine Plankton | Centopages furcatus | Clausocalanus arcuicornis | Clausocalanus furcatus | Continents | Antarctica | Corycaeus agilis | Cosmocalanus darwinii | Countries | Australia | Countries | Indonesia | Countries | New Caledonia | Countries | New Zealand | Countries | Papua New Guinea | Countries | Solomon Islands | Countries | Timor-Leste | Countries | Vanuatu | Earth Science | Biological Classification | Animals/Invertebrates | Earth Science | Biological Classification | Protists | Plankton | Phytoplankton | Earth Science | Biosphere | Aquatic Ecosystems | Coastal Habitat | Earth Science | Biosphere | Aquatic Ecosystems | Estuarine Habitat | Earth Science | Biosphere | Aquatic Ecosystems | Pelagic Habitat | Earth Science | Biosphere | Aquatic Ecosystems | Plankton | Zooplankton | Earth Science | Biosphere | Aquatic Ecosystems | Reef Habitat | Global / Oceans | Indian Ocean | Global / Oceans | Pacific Ocean | Global / Oceans | Southern Ocean | Marine Features (Australia) | Bass Strait, TAS/VIC | Marine Features (Australia) | Great Australian Bight, SA/WA | Marine Features (Australia) | Great Barrier Reef, QLD | Microscopes | Optical Microscopes | Microscopes | Optical Microscopes | Fluorescence Microscopes | Microscopes | Scanning Electron Microscopes | Microscopes | Transmission Electron Microscopes | Nets | Plankton Nets/Drop Nets | Nets | Plankton Nets/Drop Nets | Phytoplankton Nets | Niskin Bottles | Offshore Islands (Australia) | Macquarie Island | Oithona plumifera | Oncaea venusta | Paracalanus aculeatus | Paracalanus indicus | Regional Seas | Arafura Sea | Regional Seas | Coral Sea | Regional Seas | Solomon Sea | Regional Seas | Tasman Sea | Regional Seas | Timor Sea | States, Territories (Australia) | New South Wales | States, Territories (Australia) | Northern Territory | States, Territories (Australia) | Queensland | States, Territories (Australia) | South Australia | States, Territories (Australia) | Tasmania | States, Territories (Australia) | Victoria | States, Territories (Australia) | Western Australia | Temora turbinata | biota | oceans |

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Other Information
(Data paper in Scientific Data)

uri : http://www.nature.com/articles/sdata201643

(Corrigendum to Data Paper)

uri : http://www.nature.com/articles/sdata2016111

(OGC WFS help documentation)

uri : https://help.aodn.org.au/web-services/ogc-wfs/

Identifiers
  • global : 16e191c0-6b64-482b-affd-783fc2023df4
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