Data

Tasmanian salmon genotyping

Commonwealth Scientific and Industrial Research Organisation
Kijas, James ; McWilliam, Sean
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.4225/08/5a6e520150c52&rft.title=Tasmanian salmon genotyping&rft.identifier=10.4225/08/5a6e520150c52&rft.publisher=Commonwealth Scientific and Industrial Research Organisation (CSIRO)&rft.description=SNPs discovered in 20 farmed Tasmanian salmon from high covergae sequence analysis, SNps present in double haploid reference animal removed.100bp PE illumina sequence from 19 farmed atlantic salmon aligned to salmon reference genome, assembly ICSASG_v2, and sdY contigs (KP898411 and KP898412) using BWA. Variants called using GATK tools. Doulbe haploid SNPs removed.&rft.creator=Kijas, James &rft.creator=McWilliam, Sean &rft.date=2018&rft.edition=v2&rft_rights=All Rights (including copyright) CSIRO 2017.&rft_rights=CSIRO Data Licence https://wiki.csiro.au/display/dmsdoc/CSIRO+Data+Licence&rft_subject=Salmon&rft_subject=Salmo salar&rft_subject=variant discovery&rft_subject=Aquaculture&rft_subject=AGRICULTURAL AND VETERINARY SCIENCES&rft_subject=FISHERIES SCIENCES&rft_subject=Genomics&rft_subject=BIOLOGICAL SCIENCES&rft_subject=GENETICS&rft.type=dataset&rft.language=English Access the data
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Brief description

SNPs discovered in 20 farmed Tasmanian salmon from high covergae sequence analysis, SNps present in double haploid reference animal removed.

Lineage

100bp PE illumina sequence from 19 farmed atlantic salmon aligned to salmon reference genome, assembly ICSASG_v2, and sdY contigs (KP898411 and KP898412) using BWA. Variants called using GATK tools. Doulbe haploid SNPs removed.

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Subjects
Agricultural and Veterinary Sciences | Aquaculture | Biological Sciences | Fisheries Sciences | Genetics | Genomics | Salmo salar | Salmon | variant discovery |

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