Data

Switching state space model for pygmy blue whale satellite tag derived locations

Australian Antarctic Division

Andrews-Goff, V., Double, M., Möller, L., Attard, C., Bilgmann, K., Jonsen, I. and Paton, D. ; ANDREWS-GOFF, VIRGINIA ; DOUBLE, MIKE ; MOLLER, LUCIANA ; ATTARD, CATHERINE ; BILGMANN, KERSTIN ; JONSEN, IAN ; PATON, DAVE

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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.26179/5e671120e52b4&rft.title=Switching state space model for pygmy blue whale satellite tag derived locations&rft.identifier=10.26179/5e671120e52b4&rft.publisher=Australian Antarctic Data Centre&rft.description=An R data file containing a hierarchical switching state-space model of pygmy blue whale Argos-collected telemetry data using the bsam package (see Jonsen (2016) (contains the original raw Argos linked satellite telemetry dataset (data) as well as the processed SSSM output (summary), model settings (mcmc.settings) and associated model parameters (mcmc).Joint estimation over multiple individuals improves behavioural state inference from animal movement data. Scientific Reports 6: 20625.) in R. The model estimated location states for each individual at regular 3-h time intervals, accounting for measurement error in the irregularly observed Argos surface locations; and estimated the behavioural state associated with each location. Satellite tags were deployed on pygmy blue whales located in the Bonney Upwelling region, SA, between 7 January and 16 March 2015. File can be opened in R (A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/ ) using the code: readRDS('bw_3h_ssm.RDS').This dataset is described in:Mӧller, L.M., Attard, C.R.M., Bilgmann, K. et al. Movements and behaviour of blue whales satellite tagged in an Australian upwelling system. Sci Rep 10, 21165 (2020). https://doi.org/10.1038/s41598-020-78143-2Argos linked satellite telemetry datasets and the standard, associated location class information are described in various papers including Andrews-Goff V, Bestley S, Gales N, Laverick S, Paton D, Polanowski A, Schmitt N and Double M 2018. Humpback whale migrations to Antarctic summer foraging grounds through the southwest Pacific Ocean. Scientific Reports 8(1): 12333.The hierarchical switching state space model is described in:Jonsen I 2016. Joint estimation over multiple individuals improves behavioural state inference from animal movement data. Scientific Reports 6: 20625.Progress Code: completed&rft.creator=Andrews-Goff, V., Double, M., Möller, L., Attard, C., Bilgmann, K., Jonsen, I. and Paton, D. &rft.creator=ANDREWS-GOFF, VIRGINIA &rft.creator=DOUBLE, MIKE &rft.creator=MOLLER, LUCIANA &rft.creator=ATTARD, CATHERINE &rft.creator=BILGMANN, KERSTIN &rft.creator=JONSEN, IAN &rft.creator=PATON, DAVE &rft.date=2020&rft.coverage=westlimit=110; southlimit=-45; eastlimit=150; northlimit=-5&rft.coverage=westlimit=110; southlimit=-45; eastlimit=150; northlimit=-5&rft_rights=These data are publicly available for download from the provided URL.&rft_rights=Attribution 4.0 International (CC BY 4.0) https://creativecommons.org/licenses/by/4.0/legalcode&rft_rights=This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/). Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4101_pygmy_blue_whale_SSSM when using these data.&rft_rights=This metadata record is publicly available.&rft_subject=oceans&rft_subject=biota&rft_subject=EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/VERTEBRATES > MAMMALS > CETACEANS > BALEEN WHALES&rft_subject=EARTH SCIENCE > BIOSPHERE > ECOLOGICAL DYNAMICS > SPECIES/POPULATION INTERACTIONS > USE/FEEDING HABITATS&rft_subject=EARTH SCIENCE > CLIMATE INDICATORS > BIOSPHERIC INDICATORS > SPECIES MIGRATION&rft_subject=EARTH SCIENCE > OCEANS > OCEAN CIRCULATION > UPWELLING/DOWNWELLING&rft_subject=SATELLITE TELEMETRY&rft_subject=Computer > Computer&rft_subject=SATELLITES&rft_subject=MODELS&rft_subject=AMD&rft_subject=AMD/AU&rft_subject=CEOS&rft_subject=OCEAN > INDIAN OCEAN > EASTERN INDIAN OCEAN&rft_subject=GEOGRAPHIC REGION > POLAR&rft_subject=OCEAN > INDIAN OCEAN > BONNEY UPWELLING&rft_subject=OCEAN > INDIAN OCEAN > GREAT SOUTHERN AUSTRALIAN COASTAL UPWELLING SYSTEM&rft_subject=OCEAN > INDIAN OCEAN&rft.type=dataset&rft.language=English Access the data

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Attribution 4.0 International (CC BY 4.0)
https://creativecommons.org/licenses/by/4.0/legalcode

These data are publicly available for download from the provided URL.

This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/). Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4101_pygmy_blue_whale_SSSM when using these data.

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Full description

An R data file containing a hierarchical switching state-space model of pygmy blue whale Argos-collected telemetry data using the bsam package (see Jonsen (2016) (contains the original raw Argos linked satellite telemetry dataset ("data") as well as the processed SSSM output ("summary"), model settings ("mcmc.settings") and associated model parameters ("mcmc").

Joint estimation over multiple individuals improves behavioural state inference from animal movement data. Scientific Reports 6: 20625.) in R. The model estimated location states for each individual at regular 3-h time intervals, accounting for measurement error in the irregularly observed Argos surface locations; and estimated the behavioural state associated with each location. Satellite tags were deployed on pygmy blue whales located in the Bonney Upwelling region, SA, between 7 January and 16 March 2015.

File can be opened in R (A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/ ) using the code: readRDS('bw_3h_ssm.RDS').

This dataset is described in:
Mӧller, L.M., Attard, C.R.M., Bilgmann, K. et al. Movements and behaviour of blue whales satellite tagged in an Australian upwelling system. Sci Rep 10, 21165 (2020). https://doi.org/10.1038/s41598-020-78143-2

Argos linked satellite telemetry datasets and the standard, associated location class information are described in various papers including Andrews-Goff V, Bestley S, Gales N, Laverick S, Paton D, Polanowski A, Schmitt N and Double M 2018. Humpback whale migrations to Antarctic summer foraging grounds through the southwest Pacific Ocean. Scientific Reports 8(1): 12333.

The hierarchical switching state space model is described in:
Jonsen I 2016. Joint estimation over multiple individuals improves behavioural state inference from animal movement data. Scientific Reports 6: 20625.

Lineage

Progress Code: completed

Data time period: 2015-01-07 to 2016-03-16

This dataset is part of a larger collection

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text: westlimit=110; southlimit=-45; eastlimit=150; northlimit=-5

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Other Information

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url : https://data.aad.gov.au/eds/5094/download External Link

Public information for AAS project AAS_4101 (PROJECT HOME PAGE)

url : https://projects.aad.gov.au/report_project_public.cfm?project_no=AAS_4101 External Link

Citation reference for this metadata record and dataset. (VIEW RELATED INFORMATION)

url : https://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4101_pygmy_blue_whale_SSSM External Link

Identifiers

DOI : 10.26179/5E671120E52B4
global : AAS_4101_pygmy_blue_whale_SSSM