Data

SPanC-Lnc_Manuscript_data

The University of Queensland
Dr Quan Nguyen (Aggregated by) Dr Quan Nguyen (Aggregated by)
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.48610/29c1345&rft.title=SPanC-Lnc_Manuscript_data&rft.identifier=RDM ID: 5d696bfe-8de6-4ade-9c80-65847c8b4d3e&rft.publisher=The University of Queensland&rft.description=This dataset consists:all the cuTAR count matrices associated with 10X visium and scRNA-seq samples along with the cuTAR coordinates (cuTARs.bed) Visium_spaceranger_outputs;the outputs from 10X Visium spaceranger. STomics_Curio_data;the gene spatial anndata object files for the curio breast and melanoma samples acquired from Curio-Seeker (now Takara Bio USA). The uTAR object for breast and a the uTAR count matrix for melanoma are provided. The STomics gene + cuTAR data is also provided. Three samples (1 Melanoma + 2 Colorectal cancer samples were sequenced on a single chip) Xenium_processed_data: The Xenium gene + selected cuTARs for validation. Each cancer type is provided as a separate processed seurat object (.rds).&rft.creator=Dr Quan Nguyen&rft.creator=Dr Quan Nguyen&rft.date=2025&rft_rights= https://guides.library.uq.edu.au/deposit-your-data/license-reuse-data-agreement&rft_subject=eng&rft_subject=Genomics and transcriptomics&rft_subject=Bioinformatics and computational biology&rft_subject=BIOLOGICAL SCIENCES&rft_subject=Cancer cell biology&rft_subject=Oncology and carcinogenesis&rft_subject=BIOMEDICAL AND CLINICAL SCIENCES&rft.type=dataset&rft.language=English Access the data
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[email protected]
Institute for Molecular Bioscience

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This dataset consists:all the cuTAR count matrices associated with 10X visium and scRNA-seq samples along with the cuTAR coordinates (cuTARs.bed) Visium_spaceranger_outputs;the outputs from 10X Visium spaceranger. STomics_Curio_data;the gene spatial anndata object files for the curio breast and melanoma samples acquired from Curio-Seeker (now Takara Bio USA). The uTAR object for breast and a the uTAR count matrix for melanoma are provided. The STomics gene + cuTAR data is also provided. Three samples (1 Melanoma + 2 Colorectal cancer samples were sequenced on a single chip) Xenium_processed_data: The Xenium gene + selected cuTARs for validation. Each cancer type is provided as a separate processed seurat object (.rds).

Issued: 2025

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Subjects
Biological Sciences | Biomedical and Clinical Sciences | Bioinformatics and Computational Biology | Cancer Cell Biology | Genomics and Transcriptomics | Oncology and Carcinogenesis | eng |

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local : UQ:289097

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