Data

SOMSpec Infra-red spectral absorbance data (LOOV and ATR reference sets)

Macquarie University
Rodger, Alison
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25949/16641538.v1&rft.title=SOMSpec Infra-red spectral absorbance data (LOOV and ATR reference sets)&rft.identifier=10.25949/16641538.v1&rft.publisher=Macquarie University&rft.description=This dataset is the result of astudy that explores and adapts the application of the self-organising map spectralstructure-fitting methodology (SOMSpec), as opposed to other methods such asSelcon3 and CDsstr, to Protein infrared (IR) Amide I absorbance spectra(1600–1700 cm–1). The purpose of the study was to determine the effectiveness(and possible establishment as a validated benchmark) of the SOMspec methodologyin extracting protein secondary structural information from a spectrum. Leave-one-outvalidation (LOOV) for solid state transmission and thin-film attenuated totalreflectance (ATR) reference sets were established as part of the study andincluded in this dataset. The study was conductedbetween and using instrument. Referto the peer-reviewed publication for a link to the published article. The dataset consistsof the following:· 30-Proteinsolid state reference set. · 50-film spectralabsorbance input and output files. · 50-filmreference set LOOV output and trained map output files. · Aqueoustransmission and ATR testing input and output files. · SOMSpeccode data. · Band fittingfiles. &rft.creator=Rodger, Alison &rft.date=2022&rft.edition=1&rft_rights= https://creativecommons.org/licenses/by/4.0/&rft_subject=Analytical spectrometry&rft_subject=SOM&rft_subject=SOMSpec&rft_subject=LOOV&rft_subject=ATR&rft_subject=Selcon3&rft_subject=CDsstr&rft_subject=Leave One Out Validation&rft_subject=Attenuated Total Reflectance&rft_subject=30-Protein&rft_subject=50-Protein&rft_subject=Protein infrared Amide I absorbance spectra&rft_subject=Analytical Spectrometry&rft.type=dataset&rft.language=English Access the data
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Full description

This dataset is the result of a
study that explores and adapts the application of the self-organising map spectral
structure-fitting methodology (SOMSpec), as opposed to other methods such as
Selcon3 and CDsstr, to Protein infrared (IR) Amide I absorbance spectra
(1600–1700 cm–1). The purpose of the study was to determine the effectiveness
(and possible establishment as a validated benchmark) of the SOMspec methodology
in extracting protein secondary structural information from a spectrum. Leave-one-out
validation (LOOV) for solid state transmission and thin-film attenuated total
reflectance (ATR) reference sets were established as part of the study and
included in this dataset.





The study was conducted
between and using instrument. Refer
to the peer-reviewed publication for a link to the published article.





The dataset consists
of the following:



·
30-Protein
solid state reference set.



·
50-film spectral
absorbance input and output files.



·
50-film
reference set LOOV output and trained map output files.



·
Aqueous
transmission and ATR testing input and output files.



·
SOMSpec
code data.



·
Band fitting
files.




Issued: 07 03 2022

Created: 07 03 2022

Modified: 07 06 2023

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Subjects
30-Protein | 50-Protein | ATR | Analytical Spectrometry | Analytical spectrometry | Attenuated Total Reflectance | CDsstr | LOOV | Leave One Out Validation | Protein infrared Amide I absorbance spectra | SOM | SOMSpec | Selcon3 |

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