Data

SNP dataset, analysis scripts, and raw phylogenetic & phylogenomic trees for the sub-Antarctic Ectemnorhinini weevils

Monash University
Duane McKenna (Aggregated by) Helena Baird (Aggregated by) Katherine L. Moon (Aggregated by) Maurice Hullé (Aggregated by) Philippe Vernon (Aggregated by)
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.26180/14446023&rft.title=SNP dataset, analysis scripts, and raw phylogenetic & phylogenomic trees for the sub-Antarctic Ectemnorhinini weevils&rft.identifier=https://doi.org/10.26180/14446023&rft.publisher=Monash University&rft.description=Data and files associated with the manuscript: Baird et al (2021) 'Fifty Million Years of Beetle Evolution Along the Antarctic Polar Front', published in PNAS. - Full, quality-filtered dataset of 5,859 genome-wide SNPs for the sub-Antarctic weevil Palirhoeus eatoni (Coleoptera: Curculionidae), provided in vcf format- A metadata spreadsheet (providing the collection details for every P. eatoni individual, corresponding to sample IDs in the SNP dataset)- R script used to filter the SNP dataset and perform basic SNP-based phylogeographic analyses- Phylogenetic trees in .newick format, both dated and undated, are provided for the sub-Antarctic Ectemnorhinini weevil tribe as inferred from concatenated COI, cytochrome b, 16S, 28S, and Elongation factor 1-alpha sequences- R script is provided for RPANDA macroevolutionary analyses, which are based on the dated phylogenetic tree generated in BEAST.- R script and input files (with prefix 'BGB') are provided for BioGeoBEARS biogeographic inference analysis- Phylogenomic trees in .nexus format are provided for representatives of the sub-Antarctic Ectemnorhinini together with a worldwide sample of Entiminae weevils, based on a concatenated dataset of 515 genes (1st and 2nd codons)&rft.creator=Duane McKenna&rft.creator=Helena Baird&rft.creator=Katherine L. Moon&rft.creator=Maurice Hullé&rft.creator=Philippe Vernon&rft.creator=Richard H. Adams&rft.creator=Rolf G. Oberprieler&rft.creator=Seunggwan Shin&rft.creator=Steven Chown&rft.date=2021&rft_rights=CC-BY-4.0&rft_subject=Genomic&rft_subject=Population genetic structure&rft_subject=island&rft_subject=connectivity&rft_subject=sub-Antarctic island&rft_subject=Coleoptera systematics&rft_subject=Weevil&rft_subject=palaeoclimates&rft_subject=diversification process&rft_subject=Evolutionary Biology&rft_subject=Animal Systematics and Taxonomy&rft_subject=Biogeography and Phylogeography&rft_subject=Population, Ecological and Evolutionary Genetics&rft.type=dataset&rft.language=English Access the data
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Data and files associated with the manuscript: Baird et al (2021) 'Fifty Million Years of Beetle Evolution Along the Antarctic Polar Front', published in PNAS.

- Full, quality-filtered dataset of 5,859 genome-wide SNPs for the sub-Antarctic weevil Palirhoeus eatoni (Coleoptera: Curculionidae), provided in vcf format

- A metadata spreadsheet (providing the collection details for every P. eatoni individual, corresponding to sample IDs in the SNP dataset)

- R script used to filter the SNP dataset and perform basic SNP-based phylogeographic analyses

- Phylogenetic trees in .newick format, both dated and undated, are provided for the sub-Antarctic Ectemnorhinini weevil tribe as inferred from concatenated COI, cytochrome b, 16S, 28S, and Elongation factor 1-alpha sequences

- R script is provided for RPANDA macroevolutionary analyses, which are based on the dated phylogenetic tree generated in BEAST.

- R script and input files (with prefix 'BGB') are provided for BioGeoBEARS biogeographic inference analysis

- Phylogenomic trees in .nexus format are provided for representatives of the sub-Antarctic Ectemnorhinini together with a worldwide sample of Entiminae weevils, based on a concatenated dataset of 515 genes (1st and 2nd codons)

Issued: 2021-04-19

Created: 2021-04-21

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Animal Systematics and Taxonomy | Biogeography and Phylogeography | Coleoptera systematics | Evolutionary Biology | Genomic | Population genetic structure | Population, Ecological and Evolutionary Genetics | Weevil | connectivity | diversification process | island | palaeoclimates | sub-Antarctic island |

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