Data

Simulated-Metagenome.xlsx

Adelaide University
Eisenhofer Philipona, Raphael
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25909/5bd1187de8fe7&rft.title=Simulated-Metagenome.xlsx&rft.identifier=10.25909/5bd1187de8fe7&rft.publisher=The University of Adelaide&rft.description=List of microbial genomes used to construct the simulated metagenome used in an upcoming study. Simulated metagenomes were constructed using gargammel:#empirical ancient DNA distribution:./gargammel.pl --comp 1,0,0 -n 1500000 --loc 4 --scale 0.3 -briggs 0.03,0.25,0.01,0.5 MEGAN-MALT-benchmark-plus-Ecoli/ -o Euk-DB-Contam/#100bp fragments:./gargammel.pl --comp 1,0,0 -n 1500000 --l 100 -briggs 0.03,0.25,0.01,0.5 MEGAN-MALT-benchmark-plus-Ecoli/ -o Euk-DB-Contam/100bp&rft.creator=Eisenhofer Philipona, Raphael &rft.edition=1&rft_rights= https://creativecommons.org/licenses/by/4.0/&rft_subject=Bioinformatics and computational biology not elsewhere classified&rft_subject=Metagenomes&rft_subject=bioinformatics&rft_subject=Bioinformatics&rft.type=dataset&rft.language=English Access the data
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List of microbial genomes used to construct the simulated metagenome used in an upcoming study. Simulated metagenomes were constructed using gargammel:

#empirical ancient DNA distribution:
./gargammel.pl --comp 1,0,0 -n 1500000 --loc 4 --scale 0.3 -briggs 0.03,0.25,0.01,0.5 MEGAN-MALT-benchmark-plus-Ecoli/ -o Euk-DB-Contam/

#100bp fragments:
./gargammel.pl --comp 1,0,0 -n 1500000 --l 100 -briggs 0.03,0.25,0.01,0.5 MEGAN-MALT-benchmark-plus-Ecoli/ -o Euk-DB-Contam/100bp

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Subjects
Bioinformatics | Bioinformatics and computational biology not elsewhere classified | Metagenomes | bioinformatics |

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Identifiers
ACN 633 798 857