Data

Seagrass meadow extents derived from field to spaceborne earth observation at Yule Point, Great Barrier Reef, October 2017 to July 2020

University of Tasmania, Australia
Langlois, Lucas ; McKenzie, Len
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=https://metadata.imas.utas.edu.au/geonetwork/srv/eng/catalog.search#/metadata/dbc3c0e6-0597-4c57-b9ee-ff2de41d9e83&rft.title=Seagrass meadow extents derived from field to spaceborne earth observation at Yule Point, Great Barrier Reef, October 2017 to July 2020&rft.identifier=https://metadata.imas.utas.edu.au/geonetwork/srv/eng/catalog.search#/metadata/dbc3c0e6-0597-4c57-b9ee-ff2de41d9e83&rft.description=Seagrass meadow extent and meadow-scape was mapped using four alternative approaches at Yule Point, a coastal clear water habitat, in the Cairns section of the Great Barrier Reef, between October 2017 and July 2020. Approach 1 included mapping meadow boundaries and meadow-scape during low spring tides on foot using a handheld GPS. Approach 2 was where the meadows were surveyed at low tide with observations from a helicopter, with observational spot-checks conducted at a number haphazardly scattered points. Approach 3 used imagery collected during low spring tides with a UAV at an altitude of 30 m with a resolution of 0.2cm/pixel. Approach 4 used PlanetScope Dove imagery captured on 05 September 2017 and 09 August 2019 coinciding as close as possible to the field-surveys in 2017 and 2019, with 3.7 m x 3.7 m pixels (nadir viewing) acquired from the PlanetScope archive. This record describes meadow extent data collected using Approach 4 (PlanetScope imagery). View the original metadata record at https://doi.pangaea.de/10.1594/PANGAEA.946604 for the full data collection.Statement: Spatially explicit seagrass maps were created from PlanetScope Dove imagery, and classified using a machine-learning model (Random Forest) coupled with a Boot-strapping process (100 iterations). The final model predictions were then gathered into separate rasters, based on Bootstrap Probability thresholds of 60% and 100%. The final rasters were cleaned using a majority filter algorithm, to eliminate stray pixel predictions using a moving window between 3 and 9 pixels depending on the size of the imagery. For Approach 4, we created spatially explicit seagrass maps from PlanetScope Dove imagery, and conducted the classification using a machine-learning model (Random Forest) coupled with a Boot-strapping process (100 iterations). Due to the lower seagrass density and occurrence of morphologically smaller species, the classes used were: (1) bare sediment, (2) low seagrass cover (>0 ≤25%), AND (3) high seagrass cover (>25%). The final raster was cleaned using a majority filter algorithm, to eliminate stray pixel predictions using a moving window between 3 and 9 pixels depending on the size of the imagery. All meadows captured on 05 September 2017 and 09 August 2019 are represented. Seagrass distribution and abundance can change seasonally and between years, and users should ensure that they make appropriate enquires to determine whether new information is available on the particular subject matter. Model accuracy is 98.8±0.0002% and 93.69±0.0009% for 2017 and 2019, respectively.&rft.creator=Langlois, Lucas &rft.creator=McKenzie, Len &rft.date=2020&rft.coverage=westlimit=145.485; southlimit=-16.577; eastlimit=145.52; northlimit=-16.537&rft.coverage=westlimit=145.485; southlimit=-16.577; eastlimit=145.52; northlimit=-16.537&rft_rights= http://creativecommons.org/licenses/by/4.0/&rft_rights=http://i.creativecommons.org/l/by/4.0/88x31.png&rft_rights=WWW:LINK-1.0-http--related&rft_rights=License Graphic&rft_rights=Creative Commons Attribution 4.0 International License&rft_rights=http://creativecommons.org/international/&rft_rights=WWW:LINK-1.0-http--related&rft_rights=WWW:LINK-1.0-http--related&rft_rights=License Text&rft_rights=Langlois, Lucas; McKenzie, Len J (2022): Seagrass meadows derived from field to spaceborne earth observation at Yule Point, a coastal habitat in the Cairns section of the Great Barrier Reef, October 2017 to July 2020. PANGAEA, https://doi.org/10.1594/PANGAEA.946604&rft_rights=This dataset is a reduced version of the full dataset, available at https://doi.pangaea.de/10.1594/PANGAEA.946604, and is hosted by the Institute for Marine and Antarctic Studies (IMAS), University of Tasmania, on behalf of James Cook University (JCU) for the purposes of the Seamap Australia collaborative project.&rft_rights=Creative Commons Attribution 4.0 International License http://creativecommons.org/licenses/by/4.0&rft_subject=biota&rft_subject=MARINE HABITAT&rft_subject=EARTH SCIENCE&rft_subject=BIOSPHERE&rft_subject=AQUATIC ECOSYSTEMS&rft_subject=SEAGRASS&rft_subject=BIOLOGICAL CLASSIFICATION&rft_subject=PLANTS&rft_subject=ANGIOSPERMS (FLOWERING PLANTS)&rft_subject=MONOCOTS&rft_subject=Great Barrier Reef&rft_subject=Marine and Estuarine Ecology (incl. Marine Ichthyology)&rft_subject=BIOLOGICAL SCIENCES&rft_subject=ECOLOGY&rft_subject=Environmental Management&rft_subject=ENVIRONMENTAL SCIENCES&rft_subject=ENVIRONMENTAL SCIENCE AND MANAGEMENT&rft_subject=Environmental Sciences not elsewhere classified&rft_subject=OTHER ENVIRONMENTAL SCIENCES&rft_subject=human&rft_subject=orbiting satellite&rft_subject=Abundance of biota&rft_subject=Benthic habitat&rft_subject=reef&rft_subject=machine learning&rft_subject=deep learning&rft_subject=coastal&rft.type=dataset&rft.language=English Access the data

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License Text

Langlois, Lucas; McKenzie, Len J (2022): Seagrass meadows derived from field to spaceborne earth observation at Yule Point, a coastal habitat in the Cairns section of the Great Barrier Reef, October 2017 to July 2020. PANGAEA, https://doi.org/10.1594/PANGAEA.946604

This dataset is a reduced version of the full dataset, available at https://doi.pangaea.de/10.1594/PANGAEA.946604, and is hosted by the Institute for Marine and Antarctic Studies (IMAS), University of Tasmania, on behalf of James Cook University (JCU) for the purposes of the Seamap Australia collaborative project.

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Brief description

Seagrass meadow extent and meadow-scape was mapped using four alternative approaches at Yule Point, a coastal clear water habitat, in the Cairns section of the Great Barrier Reef, between October 2017 and July 2020. Approach 1 included mapping meadow boundaries and meadow-scape during low spring tides on foot using a handheld GPS. Approach 2 was where the meadows were surveyed at low tide with observations from a helicopter, with observational spot-checks conducted at a number haphazardly scattered points. Approach 3 used imagery collected during low spring tides with a UAV at an altitude of 30 m with a resolution of 0.2cm/pixel. Approach 4 used PlanetScope Dove imagery captured on 05 September 2017 and 09 August 2019 coinciding as close as possible to the field-surveys in 2017 and 2019, with 3.7 m x 3.7 m pixels (nadir viewing) acquired from the PlanetScope archive. This record describes meadow extent data collected using Approach 4 (PlanetScope imagery). View the original metadata record at https://doi.pangaea.de/10.1594/PANGAEA.946604 for the full data collection.

Lineage

Statement: Spatially explicit seagrass maps were created from PlanetScope Dove imagery, and classified using a machine-learning model (Random Forest) coupled with a Boot-strapping process (100 iterations). The final model predictions were then gathered into separate rasters, based on Bootstrap Probability thresholds of 60% and 100%. The final rasters were cleaned using a majority filter algorithm, to eliminate stray pixel predictions using a moving window between 3 and 9 pixels depending on the size of the imagery. For Approach 4, we created spatially explicit seagrass maps from PlanetScope Dove imagery, and conducted the classification using a machine-learning model (Random Forest) coupled with a Boot-strapping process (100 iterations). Due to the lower seagrass density and occurrence of morphologically smaller species, the classes used were: (1) bare sediment, (2) low seagrass cover (>0 ≤25%), AND (3) high seagrass cover (>25%). The final raster was cleaned using a majority filter algorithm, to eliminate stray pixel predictions using a moving window between 3 and 9 pixels depending on the size of the imagery. All meadows captured on 05 September 2017 and 09 August 2019 are represented. Seagrass distribution and abundance can change seasonally and between years, and users should ensure that they make appropriate enquires to determine whether new information is available on the particular subject matter. Model accuracy is 98.8±0.0002% and 93.69±0.0009% for 2017 and 2019, respectively.

Data time period: 2017-10-17 to 2020-07-30

This dataset is part of a larger collection

145.52,-16.537 145.52,-16.577 145.485,-16.577 145.485,-16.537 145.52,-16.537

145.5025,-16.557

text: westlimit=145.485; southlimit=-16.577; eastlimit=145.52; northlimit=-16.537

Other Information
(Original metadata record [PANGAEA catalogue])

doi : https://doi.pangaea.de/10.1594/PANGAEA.946604

global : 4739e4b0-4dba-4ec5-b658-02c09f27ab9a

Identifiers
  • global : dbc3c0e6-0597-4c57-b9ee-ff2de41d9e83