Data

Sample summary and analysis of biopsy samples collected during the Antarctic blue whale voyage 2013

Australian Antarctic Division

Double, M. and Andrews-Goff, V. ; DOUBLE, MIKE ; ANDREWS-GOFF, VIRGINIA

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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.4225/15/59b610ad6599c&rft.title=Sample summary and analysis of biopsy samples collected during the Antarctic blue whale voyage 2013&rft.identifier=10.4225/15/59b610ad6599c&rft.publisher=Australian Antarctic Data Centre&rft.description=Biopsy samples (small amounts of skin and blubber) were collected from humpback and blue whales during the Antarctic blue whale voyage 2013. For more information please see: http://www.marinemammals.gov.au/sorp/antarctic-blue-whale-projectThis dataset consists of an access database summarising biopsy events containing the fields:Pod: a combination of date and where the biopsy was taken from (small boat - Remora, or main vessel - Amaltal Explorer)Ship reference: sighting numberNumber of individuals sightedAge class and sexSatellite tag numberBiopsy sample numberBiopsy collection location (longitude and latitude)Biopsy collection time (UTC)Reaction to biopsyNumber of biopsy attemptsPhoto ID imagesBiopsy collection photoCommentsAn excel spreadsheet (Biopsy_info_ ABWV2013.xlsx) details the biopsy processing that occurred upon collection of a sample. Where possible, each blue whale sample was split and preserved in 2 x All Protect, 1 x EtOH and 1 x Nitrogen. Each humpback sample was additionally preserved in RNA later and stored at -20 degrees Celsius and individually detailed in spreadsheet Biopsy_info _ABWV2013(hbw).xlsx. Biopsy samples were processed to determine sex and relatedness using DLOOP analysis and the results are held in: 240513 BW Sexing Results.xlsProgress Code: completedStatement: Australian Antarctic Data Centre Note 2018-07-04: Original datasheet was reformatted to fit GBIF/IPT Biodiversity.AQ standard. The new datasheet blueWhales2013.csv provides the dataset ID, organism Quantity, organism Quantity type, record number, material sample ID, preparation, water body, event day, verbatim latitude and longitude, decimal latitude and longitude, sex, occurrence, and basis of record. The taxonomical organisation is provided to the lowest taxonomical rank that could be determined, after matched in WoRMS (World Register of Marine Species). Data contains information from report.&rft.creator=Double, M. and Andrews-Goff, V. &rft.creator=DOUBLE, MIKE &rft.creator=ANDREWS-GOFF, VIRGINIA &rft.date=2017&rft.coverage=westlimit=-170; southlimit=-70; eastlimit=135; northlimit=-60&rft.coverage=westlimit=-170; southlimit=-70; eastlimit=135; northlimit=-60&rft_rights=These data are publicly available for download from the provided URL.&rft_rights=Attribution 4.0 International (CC BY 4.0) https://creativecommons.org/licenses/by/4.0/legalcode&rft_rights=This dataset has been collected under the International Whaling Commission’s (IWC) Southern Ocean Research Partnership (SORP). The IWC-SORP ethos is one of open collaboration, communication and data sharing. The Data User will acknowledge the use of the IWC SORP dataset by the following statement: Data provided by the International Whaling Commission’s Southern Ocean Research Partnership were all based upon non-lethal samples collected under a protocol approved by the Australian Antarctic Program Animal Ethics Committee (AAPAEC). These data were provided by the Partnership for the purpose of collaborative investigation. This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/). Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4102_Biopsy2013 when using these data.&rft_rights=This metadata record is publicly available.&rft_subject=biota&rft_subject=oceans&rft_subject=EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/VERTEBRATES > MAMMALS > CETACEANS > BALEEN WHALES&rft_subject=EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/VERTEBRATES > MAMMALS > CETACEANS > TOOTHED WHALES&rft_subject=IWC SORP&rft_subject=ANTARCTIC BLUE WHALE VOYAGE&rft_subject=FV AMALTAL EXPLORER&rft_subject=FIREARMS&rft_subject=HUMPBACK WHALE&rft_subject=BLUE WHALE&rft_subject=GENETIC TAGGING&rft_subject=BIOPSY&rft_subject=MARK RECAPTURE&rft_subject=CAMERAS&rft_subject=SHIPS&rft_subject=AMD&rft_subject=AMD/AU&rft_subject=CEOS&rft_subject=GEOGRAPHIC REGION > POLAR&rft_subject=OCEAN > SOUTHERN OCEAN&rft_subject=CONTINENT > ANTARCTICA&rft.type=dataset&rft.language=English Access the data

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Attribution 4.0 International (CC BY 4.0)
https://creativecommons.org/licenses/by/4.0/legalcode

These data are publicly available for download from the provided URL.

This dataset has been collected under the International Whaling Commission’s (IWC) Southern Ocean Research Partnership (SORP). The IWC-SORP ethos is one of open collaboration, communication and data sharing. The Data User will acknowledge the use of the IWC SORP dataset by the following statement: Data provided by the International Whaling Commission’s Southern Ocean Research Partnership were all based upon non-lethal samples collected under a protocol approved by the Australian Antarctic Program Animal Ethics Committee (AAPAEC). These data were provided by the Partnership for the purpose of collaborative investigation. This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/). Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4102_Biopsy2013 when using these data.

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Full description

Biopsy samples (small amounts of skin and blubber) were collected from humpback and blue whales during the Antarctic blue whale voyage 2013. For more information please see: http://www.marinemammals.gov.au/sorp/antarctic-blue-whale-project

This dataset consists of an access database summarising biopsy events containing the fields:
Pod: a combination of date and where the biopsy was taken from (small boat - Remora, or main vessel - Amaltal Explorer)
Ship reference: sighting number
Number of individuals sighted
Age class and sex
Satellite tag number
Biopsy sample number
Biopsy collection location (longitude and latitude)
Biopsy collection time (UTC)
Reaction to biopsy
Number of biopsy attempts
Photo ID images
Biopsy collection photo
Comments

An excel spreadsheet (Biopsy_info_ ABWV2013.xlsx) details the biopsy processing that occurred upon collection of a sample. Where possible, each blue whale sample was split and preserved in 2 x All Protect, 1 x EtOH and 1 x Nitrogen. Each humpback sample was additionally preserved in RNA later and stored at -20 degrees Celsius and individually detailed in spreadsheet Biopsy_info _ABWV2013(hbw).xlsx. Biopsy samples were processed to determine sex and relatedness using DLOOP analysis and the results are held in: 240513 BW Sexing Results.xls

Lineage

Progress Code: completed

Statement: Australian Antarctic Data Centre Note 2018-07-04: Original datasheet was reformatted to fit GBIF/IPT Biodiversity.AQ standard. The new datasheet "blueWhales2013.csv" provides the dataset ID, organism Quantity, organism Quantity type, record number, material sample ID, preparation, water body, event day, verbatim latitude and longitude, decimal latitude and longitude, sex, occurrence, and basis of record. The taxonomical organisation is provided to the lowest taxonomical rank that could be determined, after matched in WoRMS (World Register of Marine Species). Data contains information from report.

Notes

Purpose
Genetic tagging from biopsy samples is a well established method that enables the identification of individuals from genetic markers such as microsatellite or SNPs. This individual identification allows the production of sightings histories required for a mark-recapture approach to estimating abundance. Genetic data can also be used assess population structure.

Data time period: 2013-01-30 to 2013-03-17