Data

SAL1 homologues AlphaFold2 structural models and electrostatic models

Also known as: SAL1 homologue structural models
The Australian National University
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25911/g95s-ca17&rft.title=SAL1 homologues AlphaFold2 structural models and electrostatic models&rft.identifier=10.25911/g95s-ca17&rft.publisher=The Australian National University&rft.description=SAL1 is a drought sensing enzyme. These are protein structural models and APBS electrostatic maps across a pH range of 7.0-8.2. There are over 500 structures from representative plant sequences derived from the 1000 Plant Transcriptome Initiative TBlastN. Sequences were selected by phylogenetic reconstruction. Sequences were processed, including removal of transit peptides, using custom code and manual curation. Structures were predicted using AlphaFold2 implementation of Colabfold. Electrostatic maps were calculated using APBS. Validated structural models of over 500 diverse representative plant sequences of SAL1 drought-sensing enzyme&rft.creator=Anonymous&rft.date=2026&rft_rights= http://legaloffice.weblogs.anu.edu.au/content/copyright/&rft_rights= http://creativecommons.org/licenses/by-nc/4.0/&rft_subject=Bioinformatics and computational biology&rft_subject=BIOLOGICAL SCIENCES&rft_subject=Molecular evolution&rft_subject=Genetics&rft.type=dataset&rft.language=English Access the data
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Contact Information

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Full description

SAL1 is a drought sensing enzyme. These are protein structural models and APBS electrostatic maps across a pH range of 7.0-8.2. There are over 500 structures from representative plant sequences derived from the 1000 Plant Transcriptome Initiative TBlastN. Sequences were selected by phylogenetic reconstruction. Sequences were processed, including removal of transit peptides, using custom code and manual curation. Structures were predicted using AlphaFold2 implementation of Colabfold. Electrostatic maps were calculated using APBS.

Significance statement

Validated structural models of over 500 diverse representative plant sequences of SAL1 drought-sensing enzyme

Created: 2022

Subjects
Biological Sciences | Bioinformatics and Computational Biology | Genetics | Molecular Evolution |

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