Data

Representation and analyses of bacterial genome evolution data

Western Sydney University
Francis, Andrew
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=https://research-data.westernsydney.edu.au/published/03896b70519411ecb15399911543e199&rft.title=Representation and analyses of bacterial genome evolution data&rft.identifier=https://research-data.westernsydney.edu.au/published/03896b70519411ecb15399911543e199&rft.description=This data set consists of computer programmes written to run models and analyse the results, as well as the output from those simulations. Programmes are text files containing code written in the Python programming language to run in the mathematical computer software Sage. Code written was run on Sage. Data that was output was processed into PDF figures also using code written for Sage. There is a folder of text files (sage-code/filename.sage), and a folder of output (sage-output/) that itself contains several levels of subfolders. All files from the output are of formats .txt, .sage, or .pdf.&rft.creator=Francis, Andrew &rft.date=2023&rft.relation=http://handle.uws.edu.au:8081/1959.7/516482&rft_rights=&rft_subject=Mathematical models&rft_subject=Bioinformatics&rft_subject=Bacteria&rft_subject=Bacterial genetics&rft_subject=Microbial genomics&rft.type=dataset&rft.language=English Access the data
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Full description

This data set consists of computer programmes written to run models and analyse the results, as well as the output from those simulations. Programmes are text files containing code written in the Python programming language to run in the mathematical computer software Sage. Code written was run on Sage. Data that was output was processed into PDF figures also using code written for Sage. There is a folder of text files (sage-code/filename.sage), and a folder of output (sage-output/) that itself contains several levels of subfolders. All files from the output are of formats .txt, .sage, or .pdf.

Data time period: 2009 to 12 2013

This dataset is part of a larger collection

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Related Publications

  • Associated with Francis, A., Tanaka, M. (2012), Evolution of variation in presence and absence of genes in bacterial pathways. BMC Evolutionary Biology, 12, 55-80. doi: 10.1186/1471-2148-12-55
    handle : 1959.7/516482
Subjects
Bacteria | Bacterial genetics | Bioinformatics | Mathematical models | Microbial genomics |

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Identifiers
  • Local : research-data.westernsydney.edu.au/published/03896b70519411ecb15399911543e199
  • Handle : 1959.7/523472
ACN 633 798 857