Data

RaScALL targets sequences

Adelaide University
Rehn, Jacqueline
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25909/19372559.v1&rft.title=RaScALL targets sequences&rft.identifier=10.25909/19372559.v1&rft.publisher=The University of Adelaide&rft.description=Target sequences representing gene fusion breakpoints or regions surrounding somatic missense mutations of clinical relevance in acute lymphoblastic leukaemia. These targets can be utilised for targeted variant detection from RNA-seq data. Targets were generated with RaScALL, an implementation of jellyfish and km for rapid screening of RNA-seq data to identify genetic alterations of clinical significance.This resource contains two sets of target sequences: Target set A (setA) contains target sequences for detection of 27 gene fusions, 16 single nucleotide variants, 3 intragenic deletions of IKZF1 and DUX4 expression which is indicative of DUX4-rearrangment.Target set B (setB) contains all targets from set A along with target sequences for detection of an additional gene fusions, SNVs and focal gene deletions.&rft.creator=Rehn, Jacqueline &rft.edition=1&rft_rights= https://creativecommons.org/licenses/by-nc/4.0/&rft_subject=Haematology&rft_subject=RaScALL&rft_subject=leukaemia&rft_subject=acute lymphoblastic leukaemia&rft_subject=RNA-seq&rft.type=dataset&rft.language=English Access the data
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Target sequences representing gene fusion breakpoints or regions surrounding somatic missense mutations of clinical relevance in acute lymphoblastic leukaemia. These targets can be utilised for targeted variant detection from RNA-seq data.

Targets were generated with RaScALL, an implementation of jellyfish and km for rapid screening of RNA-seq data to identify genetic alterations of clinical significance.

This resource contains two sets of target sequences:

Target set A (setA) contains target sequences for detection of 27 gene fusions, 16 single nucleotide variants, 3 intragenic deletions of IKZF1 and DUX4 expression which is indicative of DUX4-rearrangment.

Target set B (setB) contains all targets from set A along with target sequences for detection of an additional gene fusions, SNVs and focal gene deletions.

This dataset is part of a larger collection

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Subjects
Haematology | RNA-seq | RaScALL | acute lymphoblastic leukaemia | leukaemia |

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Identifiers
ACN 633 798 857