Data

Polar soil bacterial and fungal biodiversity survey

Australian Antarctic Data Centre
SICILIANO, STEVEN ; PALMER, ANNE ; WINSLEY, TRISTROM ; LAMB, ERIC ; BISSETT, ANDREW ; BROWN, MARK V. ; VAN DORST, JOSIE ; JI, MUKAN ; FERRARI, BELINDA C ; GROGAN, PAUL ; CHU, HAIYAN ; SNAPE, IAN
Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]
ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.4225/15/526F42ADA05B1&rft.title=Polar soil bacterial and fungal biodiversity survey&rft.identifier=10.4225/15/526F42ADA05B1&rft.publisher=Australian Antarctic Data Centre&rft.description=It contains the raw sequences (.fasta files) quality scores (.qual files), flowgram data from the 454 instrument (.flow files), an index of each sequence read and the sample to which it belongs (.groups file) which can be read into the software package 'mothur' (www.mothur.org). This is provided for both the bacterial fraction (16S) and the fungal fraction (ITS). These files were generated using the Roche 454 Titanium platform on 223 soils from the 8 locations previously mentioned. The data are generated using the 16S primers 27F and 519R and the fungal data are from the primers ITS1F and ITS 4. In the referenced study the data were analysed in mother version 1.23.1. In addition, the chemical and geographical data is provided as an excel spreadsheet. These parameters were all recorded but not necessarily implemented in the structural equation modelling. They are also the raw data and were transformed to reduce skewness and kurtosis. Full method details are in the manuscript.&rft.creator=SICILIANO, STEVEN &rft.creator=PALMER, ANNE &rft.creator=WINSLEY, TRISTROM &rft.creator=LAMB, ERIC &rft.creator=BISSETT, ANDREW &rft.creator=BROWN, MARK V. &rft.creator=VAN DORST, JOSIE &rft.creator=JI, MUKAN &rft.creator=FERRARI, BELINDA C &rft.creator=GROGAN, PAUL &rft.creator=CHU, HAIYAN &rft.creator=SNAPE, IAN &rft.date=2013&rft.coverage=northlimit=78.86; southlimit=78.86; westlimit=-75.9; eastLimit=-75.9; projection=WGS84&rft.coverage=northlimit=78.86; southlimit=78.86; westlimit=-75.9; eastLimit=-75.9; projection=WGS84&rft.coverage=northlimit=78.24; southlimit=78.24; westlimit=15.51; eastLimit=15.51; projection=WGS84&rft.coverage=northlimit=78.24; southlimit=78.24; westlimit=15.51; eastLimit=15.51; projection=WGS84&rft.coverage=northlimit=78.24; southlimit=78.24; westlimit=15.34; eastLimit=15.34; projection=WGS84&rft.coverage=northlimit=78.24; southlimit=78.24; westlimit=15.34; eastLimit=15.34; projection=WGS84&rft.coverage=northlimit=-66.31; southlimit=-66.31; westlimit=110.53; eastLimit=110.53; projection=WGS84&rft.coverage=northlimit=-66.31; southlimit=-66.31; westlimit=110.53; eastLimit=110.53; projection=WGS84&rft.coverage=northlimit=-66.275; southlimit=-66.285; westlimit=110.52; eastLimit=110.53; projection=WGS84&rft.coverage=northlimit=-66.275; southlimit=-66.285; westlimit=110.52; eastLimit=110.53; projection=WGS84&rft.coverage=northlimit=-66.37; southlimit=-66.37; westlimit=110.59; eastLimit=110.59; projection=WGS84&rft.coverage=northlimit=-66.37; southlimit=-66.37; westlimit=110.59; eastLimit=110.59; projection=WGS84&rft.coverage=northlimit=-66.41; southlimit=-66.41; westlimit=110.65; eastLimit=110.65; projection=WGS84&rft.coverage=northlimit=-66.41; southlimit=-66.41; westlimit=110.65; eastLimit=110.65; projection=WGS84&rft.coverage=northlimit=-66.47; southlimit=-66.47; westlimit=110.55; eastLimit=110.55; projection=WGS84&rft.coverage=northlimit=-66.47; southlimit=-66.47; westlimit=110.55; eastLimit=110.55; projection=WGS84&rft_rights=This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/). Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=soil_bacteria_fungi when using these data.&rft_subject=environment&rft_subject=MICROFAUNA&rft_subject=EARTH SCIENCE&rft_subject=LAND SURFACE&rft_subject=SOILS&rft_subject=MICROFLORA&rft_subject=SOIL CHEMISTRY&rft_subject=BACTERIA/ARCHAEA&rft_subject=BIOLOGICAL CLASSIFICATION&rft_subject=FUNGI&rft_subject=Soil Bacteria&rft_subject=Soil Fungi&rft_subject=ADS > Automated DNA Sequencer&rft_subject=FIELD INVESTIGATION&rft_subject=FIELD SURVEYS&rft_subject=LABORATORY&rft_subject=GEOGRAPHIC REGION > POLAR&rft_subject=CONTINENT > ANTARCTICA&rft_subject=CONTINENT > NORTH AMERICA > CANADA&rft_subject=CONTINENT > EUROPE > NORTHERN EUROPE > SCANDINAVIA > NORWAY&rft_place=Hobart&rft.type=dataset&rft.language=English Access the data
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This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/). Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=soil_bacteria_fungi when using these data.

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Brief description

It contains the raw sequences (.fasta files) quality scores (.qual files), flowgram data from the 454 instrument (.flow files), an index of each sequence read and the sample to which it belongs (.groups file) which can be read into the software package 'mothur' (www.mothur.org). This is provided for both the bacterial fraction (16S) and the fungal fraction (ITS). These files were generated using the Roche 454 Titanium platform on 223 soils from the 8 locations previously mentioned. The data are generated using the 16S primers 27F and 519R and the fungal data are from the primers ITS1F and ITS 4. In the referenced study the data were analysed in mother version 1.23.1. In addition, the chemical and geographical data is provided as an excel spreadsheet. These parameters were all recorded but not necessarily implemented in the structural equation modelling. They are also the raw data and were transformed to reduce skewness and kurtosis. Full method details are in the manuscript.

Issued: 2013-10-27

Data time period: 2005-01-01 to 2012-12-31

This dataset is part of a larger collection

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-75.9,78.86

-75.9,78.86

15.51,78.24

15.51,78.24

15.34,78.24

15.34,78.24

110.53,-66.31

110.53,-66.31

110.53,-66.275 110.53,-66.285 110.52,-66.285 110.52,-66.275 110.53,-66.275

110.525,-66.28

110.59,-66.37

110.59,-66.37

110.65,-66.41

110.65,-66.41

110.55,-66.47

110.55,-66.47

text: northlimit=78.86; southlimit=78.86; westlimit=-75.9; eastLimit=-75.9; projection=WGS84

text: northlimit=78.24; southlimit=78.24; westlimit=15.51; eastLimit=15.51; projection=WGS84

text: northlimit=78.24; southlimit=78.24; westlimit=15.34; eastLimit=15.34; projection=WGS84

text: northlimit=-66.31; southlimit=-66.31; westlimit=110.53; eastLimit=110.53; projection=WGS84

text: northlimit=-66.275; southlimit=-66.285; westlimit=110.52; eastLimit=110.53; projection=WGS84

text: northlimit=-66.37; southlimit=-66.37; westlimit=110.59; eastLimit=110.59; projection=WGS84

text: northlimit=-66.41; southlimit=-66.41; westlimit=110.65; eastLimit=110.65; projection=WGS84

text: northlimit=-66.47; southlimit=-66.47; westlimit=110.55; eastLimit=110.55; projection=WGS84

Subjects
ADS > Automated DNA Sequencer | BACTERIA/ARCHAEA | BIOLOGICAL CLASSIFICATION | CONTINENT > ANTARCTICA | CONTINENT > EUROPE > NORTHERN EUROPE > SCANDINAVIA > NORWAY | CONTINENT > NORTH AMERICA > CANADA | EARTH SCIENCE | FIELD INVESTIGATION | FIELD SURVEYS | FUNGI | GEOGRAPHIC REGION > POLAR | LABORATORY | LAND SURFACE | MICROFAUNA | MICROFLORA | SOIL CHEMISTRY | SOILS | Soil Bacteria | Soil Fungi | environment |

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Other Information

AU-ANL:PEAU : http://nla.gov.au/nla.party-617536

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