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Plastid phylogenomics reveals evolutionary relationships in the mycoheterotrophic orchid genus Dipodium and provides insights into plastid gene degeneration: supporting data

Commonwealth Scientific and Industrial Research Organisation
Goedderz, Stephanie ; Clements, Mark ; Bent, Stephen ; Nicholls, James ; Patel, Vidushi ; Crayn, Darren ; Schlü; ter, Philipp
Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]
ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25919/6wcx-0h88&rft.title=Plastid phylogenomics reveals evolutionary relationships in the mycoheterotrophic orchid genus Dipodium and provides insights into plastid gene degeneration: supporting data&rft.identifier=https://doi.org/10.25919/6wcx-0h88&rft.publisher=Commonwealth Scientific and Industrial Research Organisation&rft.description=This Collection contains data supporting the associated publication 'Plastid phylogenomics reveals evolutionary relationships in the mycoheterotrophic orchid genus Dipodium and provides insights into plastid gene degeneration' by Goedderz et al. 2024 published in Frontiers in Plant Science 15:1388537 (https://doi.10.3389/fpls.2024.1388537). The study investigated phylogenetic relationships and plastid genome degeneration in the orchid genus Dipodium based on plastid data derived from genome skimming data.\nLineage: DNA extractions from plant tissue, genome skimming data generation via high throughput sequencing, plastid genome assemblies, plastome annotation, plastid coding regions alignments, phylogenetic and divergence time analyses. Full details provided in Goedderz et al. 2024, Frontiers in Plant Science 15:1388537 (https://doi.10.3389/fpls.2024.1388537)&rft.creator=Goedderz, Stephanie &rft.creator=Clements, Mark &rft.creator=Bent, Stephen &rft.creator=Nicholls, James &rft.creator=Patel, Vidushi &rft.creator=Crayn, Darren &rft.creator=Schlüter, Philipp &rft.date=2024&rft.edition=v1&rft.relation=https://doi.org/10.3389/fpls.2024.1388537&rft.coverage=westlimit=107.7679; southlimit=-44.589600000000004; eastlimit=161.0909; northlimit=-8.8674; projection=WGS84&rft_rights=Creative Commons Attribution 4.0 International Licence https://creativecommons.org/licenses/by/4.0/&rft_rights=Data is accessible online and may be reused in accordance with licence conditions&rft_rights=All Rights (including copyright) CSIRO, Australian Tropical Herbarium, Centre for Australian National Biodiversity Research, University of Hohenheim 2024.&rft_subject=Dipodium&rft_subject=plastome&rft_subject=plastid data&rft_subject=phylogenetics&rft_subject=gene degeneration&rft_subject=Orchidaceae&rft_subject=orchids&rft_subject=Australia&rft_subject=Phylogeny and comparative analysis&rft_subject=Evolutionary biology&rft_subject=BIOLOGICAL SCIENCES&rft_subject=Plant and fungus systematics and taxonomy&rft_subject=Genome structure and regulation&rft_subject=Genetics&rft.type=dataset&rft.language=English Access the data
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Creative Commons Attribution 4.0 International Licence
https://creativecommons.org/licenses/by/4.0/

Data is accessible online and may be reused in accordance with licence conditions

All Rights (including copyright) CSIRO, Australian Tropical Herbarium, Centre for Australian National Biodiversity Research, University of Hohenheim 2024.

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Brief description

This Collection contains data supporting the associated publication 'Plastid phylogenomics reveals evolutionary relationships in the mycoheterotrophic orchid genus Dipodium and provides insights into plastid gene degeneration' by Goedderz et al. 2024 published in Frontiers in Plant Science 15:1388537 (https://doi.10.3389/fpls.2024.1388537). The study investigated phylogenetic relationships and plastid genome degeneration in the orchid genus Dipodium based on plastid data derived from genome skimming data.
Lineage: DNA extractions from plant tissue, genome skimming data generation via high throughput sequencing, plastid genome assemblies, plastome annotation, plastid coding regions alignments, phylogenetic and divergence time analyses. Full details provided in Goedderz et al. 2024, Frontiers in Plant Science 15:1388537 (https://doi.10.3389/fpls.2024.1388537)

Available: 2024-05-22

Data time period: 2022-01-02 to 2024-03-31

161.0909,-8.8674 161.0909,-44.5896 107.7679,-44.5896 107.7679,-8.8674 161.0909,-8.8674

134.4294,-26.7285

Subjects
Australia | Biological Sciences | Dipodium | Evolutionary Biology | Genetics | Genome Structure and Regulation | Orchidaceae | Phylogeny and Comparative Analysis | Plant and Fungus Systematics and Taxonomy | gene degeneration | orchids | phylogenetics | plastid data | plastome |

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