Data

Patterns of population genetic structure among Australian and South Pacific humpback whales

Australian Antarctic Division
Schmitt, N.T., Polanowski, A. and Double, M. ; SCHMITT, NATALIE T ; POLANOWSKI, ANDREA ; DOUBLE, MIKE
Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]
ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=http://data.aad.gov.au/metadata/AAS_4101_humpback_population_structure_mixing&rft.title=Patterns of population genetic structure among Australian and South Pacific humpback whales&rft.identifier=http://data.aad.gov.au/metadata/AAS_4101_humpback_population_structure_mixing&rft.publisher=Australian Antarctic Data Centre&rft.description=A spreadsheet detailing the analysis of humpback whale biopsy samples including the field:Sample IDDuplicate (notes field)Location sample was takenCollection date (UTC)Collection latitude and longitudeSexHaplotypeDLOOP sequenceMicrosatellite sequenceSingle nucleotide polymorphism (SNP) markersProgress Code: completedStatement: Australian Antarctic Data Centre Note, 2018-07-10: Original datasheet was reformatted to fit IPT Biodiversity.AQ standard. The new datasheet humpbackWhales.csv provides the dataset ID, decimal latitude and longitude, location, sex, occurrence, and date of event. The taxonomical organisation is provided to the lowest taxonomical rank that could be determined, after matched in WoRMS (World Register of Marine Species).&rft.creator=Schmitt, N.T., Polanowski, A. and Double, M. &rft.creator=SCHMITT, NATALIE T &rft.creator=POLANOWSKI, ANDREA &rft.creator=DOUBLE, MIKE &rft.date=2017&rft.coverage=westlimit=-140; southlimit=-70; eastlimit=170; northlimit=-35&rft.coverage=westlimit=-140; southlimit=-70; eastlimit=170; northlimit=-35&rft_rights=These data are publicly available for download from the provided URL. Copies of three publications are available for download from the provided URL to AAD staff only.&rft_rights=Attribution 4.0 International (CC BY 4.0) https://creativecommons.org/licenses/by/4.0/legalcode&rft_rights=The samples collected in 2010 detailed in this dataset were collected under the International Whaling Commission's (IWC) Southern Ocean Research Partnership (SORP). The IWC-SORP ethos is one of open collaboration, communication and data sharing. The Data User will acknowledge the use of the IWC SORP dataset by the following statement: Data provided by the International Whaling Commission's Southern Ocean Research Partnership were all based upon non-lethal samples collected under a protocol approved by the Australian Antarctic Program Animal Ethics Committee (AAPAEC). These data were provided by the Partnership for the purpose of collaborative investigation. This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/). Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4101_humpback_population_structure_mixing when using these data.&rft_rights=This metadata record is publicly available.&rft_subject=oceans&rft_subject=biota&rft_subject=EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/VERTEBRATES > MAMMALS > CETACEANS > BALEEN WHALES&rft_subject=EARTH SCIENCE > HUMAN DIMENSIONS > ENVIRONMENTAL IMPACTS > CONSERVATION&rft_subject=EARTH SCIENCE > AGRICULTURE > ANIMAL SCIENCE > ANIMAL BREEDING AND GENETICS&rft_subject=EARTH SCIENCE > CLIMATE INDICATORS > BIOSPHERIC INDICATORS > SPECIES MIGRATION&rft_subject=HUMPBACK WHALE&rft_subject=MICROSATELLITES&rft_subject=POPULATION GENETIC STRUCTURE&rft_subject=MIXED STOCK ANALYSIS&rft_subject=SINGLE NUCLEOTIDE POLYMORPHISMS&rft_subject=MITOCHONDRIAL DNA&rft_subject=ADS > Automated DNA Sequencer&rft_subject=FIELD INVESTIGATION&rft_subject=LABORATORY&rft_subject=AMD/AU&rft_subject=AMD&rft_subject=CEOS&rft_subject=GEOGRAPHIC REGION > POLAR&rft_subject=CONTINENT > ANTARCTICA&rft_subject=OCEAN > SOUTHERN OCEAN&rft_subject=CONTINENT > AUSTRALIA/NEW ZEALAND > AUSTRALIA&rft.type=dataset&rft.language=English Access the data
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Licence & Rights:

Open Licence view details
CC-BY

Attribution 4.0 International (CC BY 4.0)
https://creativecommons.org/licenses/by/4.0/legalcode

These data are publicly available for download from the provided URL.

Copies of three publications are available for download from the provided URL to AAD staff only.

The samples collected in 2010 detailed in this dataset were collected under the International Whaling Commission's (IWC) Southern Ocean Research Partnership (SORP). The IWC-SORP ethos is one of open collaboration, communication and data sharing. The Data User will acknowledge the use of the IWC SORP dataset by the following statement:
Data provided by the International Whaling Commission's Southern Ocean Research Partnership were all based upon non-lethal samples collected under a protocol approved by the Australian Antarctic Program Animal Ethics Committee (AAPAEC). These data were provided by the Partnership for the purpose of collaborative investigation.


This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/).

Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4101_humpback_population_structure_mixing when using these data.

This metadata record is publicly available.

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Full description

A spreadsheet detailing the analysis of humpback whale biopsy samples including the field:
Sample ID
Duplicate (notes field)
Location sample was taken
Collection date (UTC)
Collection latitude and longitude
Sex
Haplotype
DLOOP sequence
Microsatellite sequence
Single nucleotide polymorphism (SNP) markers

Lineage

Progress Code: completed
Statement: Australian Antarctic Data Centre Note, 2018-07-10: Original datasheet was reformatted to fit IPT Biodiversity.AQ standard. The new datasheet "humpbackWhales.csv" provides the dataset ID, decimal latitude and longitude, location, sex, occurrence, and date of event. The taxonomical organisation is provided to the lowest taxonomical rank that could be determined, after matched in WoRMS (World Register of Marine Species).

Notes

Purpose
By utilising both mitochondrial and nuclear genetic markers, the population structure and distribution of humpback whales that migrate to separate winter breeding grounds along the north-western and north-eastern coasts of Australia, and their interaction with the endangered populations of the South Pacific can be examined. Specifically, this dataset was used to look at population structure among putative breeding populations, the mixing of breeding populations on high latitude Antarctic feeding grounds and evidence for sex-specific migration along the eastern Australian migratory corridor.

Data time period: 2006-11-22 to 2011-01-16

This dataset is part of a larger collection

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170,-35 170,-70 -140,-70 -140,-35 170,-35

15,-52.5

text: westlimit=-140; southlimit=-70; eastlimit=170; northlimit=-35

Subjects
ADS > Automated DNA Sequencer | AMD | AMD/AU | CEOS | CONTINENT > ANTARCTICA | CONTINENT > AUSTRALIA/NEW ZEALAND > AUSTRALIA | EARTH SCIENCE > AGRICULTURE > ANIMAL SCIENCE > ANIMAL BREEDING AND GENETICS | EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/VERTEBRATES > MAMMALS > CETACEANS > BALEEN WHALES | EARTH SCIENCE > CLIMATE INDICATORS > BIOSPHERIC INDICATORS > SPECIES MIGRATION | EARTH SCIENCE > HUMAN DIMENSIONS > ENVIRONMENTAL IMPACTS > CONSERVATION | FIELD INVESTIGATION | GEOGRAPHIC REGION > POLAR | HUMPBACK WHALE | LABORATORY | MICROSATELLITES | MITOCHONDRIAL DNA | MIXED STOCK ANALYSIS | OCEAN > SOUTHERN OCEAN | POPULATION GENETIC STRUCTURE | SINGLE NUCLEOTIDE POLYMORPHISMS | biota | oceans |

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Other Information
Download the data (GET DATA > DIRECT DOWNLOAD)

url : https://data.aad.gov.au/eds/4695/download

Public information for AAS project AAS_4101 (PROJECT HOME PAGE)

url : https://projects.aad.gov.au/report_project_public.cfm?project_no=AAS_4101

Download copies of three of the referenced publications - AAD Staff Only (VIEW RELATED INFORMATION > PUBLICATIONS)

url : https://data.aad.gov.au/eds/4696/download

Citation reference for this metadata record and dataset. (VIEW RELATED INFORMATION)

url : https://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4101_humpback_population_structure_mixing

Identifiers
  • global : AAS_4101_humpback_population_structure_mixing