NESP MaC Project 3.16 - Delineation and estimation of the Maugean skate population in Macquarie Harbour, Tasmania, 2023-2024 (IMAS)

Research Project

Researchers: Emma Flukes (Point of contact) ,  Institute for Marine and Antarctic Studies (Associated with) ,  Moreno, David (collaborator)

Full description This record provides an overview of the NESP Marine and Coastal Hub Research Plan 2023 project "Delineation and estimation of the Maugean skate population in Macquarie Harbour, Tasmania". No public data outputs are planned for this project.
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The Maugean skate (Zearaja maugeana) is now only found in Macquarie Harbour on Tasmania’s west coast, which has a long history of environmental degradation. The species is listed as Endangered under Commonwealth and Tasmanian legislation, and its restricted distribution, small population size, and exposure to degraded environmental conditions make population monitoring a high conservation priority.

Recent research suggests that the Macquarie Harbour population may be declining. However, existing abundance estimation methods are inadequate because the species is cryptic, capture-based methods pose risks to skate health, and conventional optical surveys are limited by the harbour’s shallow, stratified, and highly turbid conditions.

This project developed and tested new approaches to estimate and monitor the Maugean skate population using next-generation genetic sequencing and novel imaging technologies. Non-invasive acoustic methods (adaptive resolution imaging sonar (ARIS), synthetic aperture sonar, performed better than optical approaches (LiDAR, conventional video), under Macquarie Harbour conditions. ARIS was identified as the most suitable image-based monitoring tool for future population surveys. The genetic component generated the first reference-quality whole and mitochondrial genomes for the species and sequenced samples from 162 individuals. Genome-wide single nucleotide polymorphism (SNP) analyses showed that the Macquarie Harbour population has very low genetic diversity, which may influence how genetic risks are interpreted in recovery planning.

The project produced new monitoring methodologies, genomic reference resources, and population genetic datasets to support future monitoring of Maugean skate abundance, population structure, and genetic health. The findings will inform conservation planning and evaluation of recovery strategies including captive breeding, translocation, and long-term genetic monitoring under changing environmental conditions.

Outputs
• Tissue sampling results and genome-wide population genetic structure [dataset]
• Final project report [written]

Lineage Maintenance and Update Frequency: asNeeded

Notes Credit
This project is funded by the Australian Government Department of Climate Change, the Environment, Energy & Water (DCCEEW) through the NESP Marine and Coastal Hub. In addition to NESP (DCCEEW) funding, this project is matched by an equivalent amount of in-kind support and co-investment from project partners and collaborators.

Notes Purpose
To develop a routine, cost-effective population survey tool, and assess the size of the Macquarie Harbour Maugean skate population.

Data time period: 2023-01-16 to 2024-12-15

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