Data

Molecular responses of sponge larvae exposed to partially weathered condensate oil

Australian Ocean Data Network
Australian Institute of Marine Science (AIMS)
Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]
ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=http://catalogue-aodn.prod.aodn.org.au/geonetwork/srv/eng/search?uuid=04c7257a-9941-4378-8fca-2d8dc05e6c67&rft.title=Molecular responses of sponge larvae exposed to partially weathered condensate oil&rft.identifier=http://catalogue-aodn.prod.aodn.org.au/geonetwork/srv/eng/search?uuid=04c7257a-9941-4378-8fca-2d8dc05e6c67&rft.publisher=Australian Institute of Marine Science (AIMS)&rft.description=This data collection consists of sponge larval settlement data, differential gene expression data and microbial amplicon sequence variant (ASV) data associated with an experiment examining the effects of a water accommodated fraction (WAF) of partially weathered condensate oil on the common Indo-Pacific sponge, Phyllospongia foliascens. Sponge larvae were exposed to six WAF treatment dilutions ranging from 0 to 100% for a period of 24-h and processed for Tag-based RNA-Seq and 16S rRNA amplicon sequencing. Chemical characterisation of the WAF used in this study was perfomed in Negri et al. 2021, with details in the associated repository (https://apps.aims.gov.au/metadata/view/615e208d-f6c7-4b2f-b99e-d4fc50614e48). For full methodological and analytical details please refer to the full research publication, Luter et al. (in review) its supplementary materials and the associated GitHub repository (https://github.com/open-AIMS/sponge-larvae-condensate-toxicity). Additionally, raw sequencing data can be found in the NCBI Sequence Read Archives under BioProject number PRJNA1012550.Maintenance and Update Frequency: asNeeded&rft.creator=Australian Institute of Marine Science (AIMS) &rft.date=2024&rft.coverage=westlimit=147.05558538436892; southlimit=-19.266764300093197; eastlimit=147.05558538436892; northlimit=-19.266764300093197&rft.coverage=westlimit=147.05558538436892; southlimit=-19.266764300093197; eastlimit=147.05558538436892; northlimit=-19.266764300093197&rft_rights= http://creativecommons.org/licenses/by-nc/3.0/au/&rft_rights=http://i.creativecommons.org/l/by-nc/3.0/au/88x31.png&rft_rights=WWW:LINK-1.0-http--related&rft_rights=License Graphic&rft_rights=Creative Commons Attribution-NonCommercial 3.0 Australia License&rft_rights=http://creativecommons.org/international/au/&rft_rights=WWW:LINK-1.0-http--related&rft_rights=WWW:LINK-1.0-http--related&rft_rights=License Text&rft_rights=Use Limitation: All AIMS data, products and services are provided as is and AIMS does not warrant their fitness for a particular purpose or non-infringement. While AIMS has made every reasonable effort to ensure high quality of the data, products and services, to the extent permitted by law the data, products and services are provided without any warranties of any kind, either expressed or implied, including without limitation any implied warranties of title, merchantability, and fitness for a particular purpose or non-infringement. AIMS make no representation or warranty that the data, products and services are accurate, complete, reliable or current. To the extent permitted by law, AIMS exclude all liability to any person arising directly or indirectly from the use of the data, products and services.&rft_rights=Attribution: Format for citation of metadata sourced from Australian Institute of Marine Science (AIMS) in a list of reference is as follows: Australian Institute of Marine Science (AIMS). (2023). Molecular responses of sponge larvae exposed to partially weathered condensate oil. https://apps.aims.gov.au/metadata/view/04c7257a-9941-4378-8fca-2d8dc05e6c67, accessed[date-of-access].&rft_rights=Creative Commons Attribution-NonCommercial 3.0 Australia License http://creativecommons.org/licenses/by-nc/3.0/au&rft_subject=oceans&rft_subject=Amplicon&rft.type=dataset&rft.language=English Access the data
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Use Limitation: All AIMS data, products and services are provided "as is" and AIMS does not warrant their fitness for a particular purpose or non-infringement. While AIMS has made every reasonable effort to ensure high quality of the data, products and services, to the extent permitted by law the data, products and services are provided without any warranties of any kind, either expressed or implied, including without limitation any implied warranties of title, merchantability, and fitness for a particular purpose or non-infringement. AIMS make no representation or warranty that the data, products and services are accurate, complete, reliable or current. To the extent permitted by law, AIMS exclude all liability to any person arising directly or indirectly from the use of the data, products and services.

Attribution: Format for citation of metadata sourced from Australian Institute of Marine Science (AIMS) in a list of reference is as follows: "Australian Institute of Marine Science (AIMS). (2023). Molecular responses of sponge larvae exposed to partially weathered condensate oil. https://apps.aims.gov.au/metadata/view/04c7257a-9941-4378-8fca-2d8dc05e6c67, accessed[date-of-access]".

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Contact Information

reception@aims.gov.au
adc@aims.gov.au

Brief description

This data collection consists of sponge larval settlement data, differential gene expression data and microbial amplicon sequence variant (ASV) data associated with an experiment examining the effects of a water accommodated fraction (WAF) of partially weathered condensate oil on the common Indo-Pacific sponge, Phyllospongia foliascens. Sponge larvae were exposed to six WAF treatment dilutions ranging from 0 to 100% for a period of 24-h and processed for Tag-based RNA-Seq and 16S rRNA amplicon sequencing. Chemical characterisation of the WAF used in this study was perfomed in Negri et al. 2021, with details in the associated repository (https://apps.aims.gov.au/metadata/view/615e208d-f6c7-4b2f-b99e-d4fc50614e48). For full methodological and analytical details please refer to the full research publication, Luter et al. (in review) its supplementary materials and the associated GitHub repository (https://github.com/open-AIMS/sponge-larvae-condensate-toxicity). Additionally, raw sequencing data can be found in the NCBI Sequence Read Archives under BioProject number PRJNA1012550.

Lineage

Maintenance and Update Frequency: asNeeded

Notes

Credit
Luter, HM. Australian Insitute of Marine Science (AIMS), Australia
Credit
Flores, F. AIMS, Australia
Credit
Brinkman, DL. AIMS, Australia
Credit
Fisher, R. AIMS, Australia
Credit
Negri, A. AIMS, Australia
Credit
Laffy, P. AIMS, Australia

Modified: 19 07 2024

This dataset is part of a larger collection

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147.05559,-19.26676

147.05558538437,-19.266764300093

text: westlimit=147.05558538436892; southlimit=-19.266764300093197; eastlimit=147.05558538436892; northlimit=-19.266764300093197

Subjects
Amplicon | oceans |

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Other Information
Luter, H. M., Laffy, P., Flores, F., Brinkman, D. L., Fisher, R., & Negri, A. P. (2024). Molecular responses of sponge larvae exposed to partially weathered condensate oil. Marine Pollution Bulletin, 199, 115928. https://doi.org/10.1016/j.marpolbul.2023.115928

doi : https://doi.org/10.1016/j.marpolbul.2023.115928

Genes associated with significant GO terms (Table S4)

uri : https://api.aims.gov.au/data-v2.0/04c7257a-9941-4378-8fca-2d8dc05e6c67/files/GOGenes_wDESeq2_geneNames_AllTr_0.05_Table S4.xlsx

RNA Tag-Seq count data

uri : https://api.aims.gov.au/data-v2.0/04c7257a-9941-4378-8fca-2d8dc05e6c67/files/allcounts_reordered.txt

Larval settlement and gene expression data for threshold models (bayesnec)

uri : https://api.aims.gov.au/data-v2.0/04c7257a-9941-4378-8fca-2d8dc05e6c67/files/GEvsSettlement_BayesnecInputData.xlsx

QIIME2 biom feature table for phyloseq input

uri : https://api.aims.gov.au/data-v2.0/04c7257a-9941-4378-8fca-2d8dc05e6c67/files/feature-table.dada2_new.biom

Microbial metadata for phyloseq input

uri : https://api.aims.gov.au/data-v2.0/04c7257a-9941-4378-8fca-2d8dc05e6c67/files/CartCondensateMetadata.txt

Input data for microbial indicator species analysis

uri : https://api.aims.gov.au/data-v2.0/04c7257a-9941-4378-8fca-2d8dc05e6c67/files/CartCondASV_RelAbunNoNegSW_4indval.csv

Results from differential expression analysis (DESeq2; Table S3)

uri : https://api.aims.gov.au/data-v2.0/04c7257a-9941-4378-8fca-2d8dc05e6c67/files/Combined DESeq2 data_Table S3.xlsx

Identifiers
  • global : 04c7257a-9941-4378-8fca-2d8dc05e6c67
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